Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32665 and RR42_RS32670 are separated by 15 nucleotides RR42_RS32670 and RR42_RS32675 are separated by 32 nucleotides
RR42_RS32665: RR42_RS32665 - phenol hydroxylase, at 2,724,372 to 2,725,439
_RS32665
RR42_RS32670: RR42_RS32670 - phenol hydroxylase, at 2,725,455 to 2,725,814
_RS32670
RR42_RS32675: RR42_RS32675 - phenol 2-monooxygenase, at 2,725,847 to 2,727,361
_RS32675
Position (kb)
2725
2726 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2724.518 kb on - strand, within RR42_RS32665 at 2724.560 kb on - strand, within RR42_RS32665 at 2724.643 kb on + strand, within RR42_RS32665 at 2724.694 kb on + strand, within RR42_RS32665 at 2724.694 kb on + strand, within RR42_RS32665 at 2724.695 kb on - strand, within RR42_RS32665 at 2724.856 kb on + strand, within RR42_RS32665 at 2725.028 kb on - strand, within RR42_RS32665 at 2725.456 kb on + strand at 2725.624 kb on + strand, within RR42_RS32670 at 2725.631 kb on - strand, within RR42_RS32670 at 2725.836 kb on - strand at 2725.951 kb on + strand at 2725.951 kb on + strand at 2725.952 kb on - strand at 2725.952 kb on - strand at 2725.992 kb on + strand at 2725.993 kb on - strand at 2726.095 kb on - strand, within RR42_RS32675 at 2726.095 kb on - strand, within RR42_RS32675 at 2726.340 kb on + strand, within RR42_RS32675 at 2726.341 kb on - strand, within RR42_RS32675 at 2726.520 kb on + strand, within RR42_RS32675 at 2726.521 kb on - strand, within RR42_RS32675 at 2726.521 kb on - strand, within RR42_RS32675 at 2726.545 kb on + strand, within RR42_RS32675 at 2726.545 kb on + strand, within RR42_RS32675 at 2726.546 kb on - strand, within RR42_RS32675 at 2726.656 kb on + strand, within RR42_RS32675 at 2726.657 kb on - strand, within RR42_RS32675 at 2726.766 kb on + strand, within RR42_RS32675
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 2,724,518 - RR42_RS32665 0.14 -1.8 2,724,560 - RR42_RS32665 0.18 -0.5 2,724,643 + RR42_RS32665 0.25 -2.8 2,724,694 + RR42_RS32665 0.30 -2.4 2,724,694 + RR42_RS32665 0.30 -1.6 2,724,695 - RR42_RS32665 0.30 -1.1 2,724,856 + RR42_RS32665 0.45 +0.3 2,725,028 - RR42_RS32665 0.61 -3.1 2,725,456 + -0.6 2,725,624 + RR42_RS32670 0.47 -2.6 2,725,631 - RR42_RS32670 0.49 +0.5 2,725,836 - +2.0 2,725,951 + -0.3 2,725,951 + -1.6 2,725,952 - +0.3 2,725,952 - +1.3 2,725,992 + +1.3 2,725,993 - +0.3 2,726,095 - RR42_RS32675 0.16 +0.4 2,726,095 - RR42_RS32675 0.16 -1.8 2,726,340 + RR42_RS32675 0.33 -0.1 2,726,341 - RR42_RS32675 0.33 +0.1 2,726,520 + RR42_RS32675 0.44 +0.1 2,726,521 - RR42_RS32675 0.44 +0.5 2,726,521 - RR42_RS32675 0.44 -0.4 2,726,545 + RR42_RS32675 0.46 -0.6 2,726,545 + RR42_RS32675 0.46 -1.0 2,726,546 - RR42_RS32675 0.46 -1.8 2,726,656 + RR42_RS32675 0.53 +0.7 2,726,657 - RR42_RS32675 0.53 +0.6 2,726,766 + RR42_RS32675 0.61 -1.0
Or see this region's nucleotide sequence