Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32425 and RR42_RS32430 are separated by 41 nucleotides RR42_RS32430 and RR42_RS32435 are separated by 94 nucleotides
RR42_RS32425: RR42_RS32425 - multidrug transporter, at 2,671,469 to 2,672,965
_RS32425
RR42_RS32430: RR42_RS32430 - SAM-dependent methyltransferase, at 2,673,007 to 2,673,777
_RS32430
RR42_RS32435: RR42_RS32435 - hypothetical protein, at 2,673,872 to 2,674,834
_RS32435
Position (kb)
2673
2674 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2672.019 kb on - strand, within RR42_RS32425 at 2672.092 kb on - strand, within RR42_RS32425 at 2672.575 kb on - strand, within RR42_RS32425 at 2672.601 kb on - strand, within RR42_RS32425 at 2672.601 kb on - strand, within RR42_RS32425 at 2672.759 kb on + strand, within RR42_RS32425 at 2672.759 kb on + strand, within RR42_RS32425 at 2672.759 kb on + strand, within RR42_RS32425 at 2672.760 kb on - strand, within RR42_RS32425 at 2672.760 kb on - strand, within RR42_RS32425 at 2672.760 kb on - strand, within RR42_RS32425 at 2672.760 kb on - strand, within RR42_RS32425 at 2672.792 kb on + strand, within RR42_RS32425 at 2672.793 kb on - strand, within RR42_RS32425 at 2672.793 kb on - strand, within RR42_RS32425 at 2673.028 kb on - strand at 2673.028 kb on - strand at 2673.029 kb on + strand at 2673.029 kb on + strand at 2673.029 kb on + strand at 2673.030 kb on - strand at 2673.209 kb on + strand, within RR42_RS32430 at 2673.279 kb on - strand, within RR42_RS32430 at 2673.538 kb on + strand, within RR42_RS32430 at 2673.538 kb on + strand, within RR42_RS32430 at 2673.722 kb on + strand at 2673.722 kb on + strand at 2673.722 kb on + strand at 2673.723 kb on - strand at 2673.723 kb on - strand at 2673.723 kb on - strand at 2673.726 kb on + strand at 2673.906 kb on - strand at 2673.906 kb on - strand at 2673.912 kb on + strand at 2673.913 kb on - strand at 2673.913 kb on - strand at 2673.913 kb on - strand at 2673.913 kb on - strand at 2673.986 kb on + strand, within RR42_RS32435 at 2673.986 kb on + strand, within RR42_RS32435 at 2674.074 kb on + strand, within RR42_RS32435 at 2674.237 kb on - strand, within RR42_RS32435 at 2674.237 kb on - strand, within RR42_RS32435 at 2674.260 kb on + strand, within RR42_RS32435 at 2674.260 kb on + strand, within RR42_RS32435 at 2674.261 kb on - strand, within RR42_RS32435 at 2674.261 kb on - strand, within RR42_RS32435 at 2674.440 kb on + strand, within RR42_RS32435 at 2674.441 kb on - strand, within RR42_RS32435 at 2674.608 kb on + strand, within RR42_RS32435 at 2674.608 kb on + strand, within RR42_RS32435 at 2674.609 kb on - strand, within RR42_RS32435
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 2,672,019 - RR42_RS32425 0.37 +0.6 2,672,092 - RR42_RS32425 0.42 -0.9 2,672,575 - RR42_RS32425 0.74 +0.4 2,672,601 - RR42_RS32425 0.76 +0.3 2,672,601 - RR42_RS32425 0.76 -2.4 2,672,759 + RR42_RS32425 0.86 -0.7 2,672,759 + RR42_RS32425 0.86 +0.6 2,672,759 + RR42_RS32425 0.86 +0.2 2,672,760 - RR42_RS32425 0.86 +1.6 2,672,760 - RR42_RS32425 0.86 -1.1 2,672,760 - RR42_RS32425 0.86 -1.0 2,672,760 - RR42_RS32425 0.86 +0.7 2,672,792 + RR42_RS32425 0.88 +1.4 2,672,793 - RR42_RS32425 0.88 -0.6 2,672,793 - RR42_RS32425 0.88 +2.0 2,673,028 - -0.6 2,673,028 - -1.3 2,673,029 + -0.8 2,673,029 + +1.2 2,673,029 + +2.2 2,673,030 - -0.9 2,673,209 + RR42_RS32430 0.26 -2.7 2,673,279 - RR42_RS32430 0.35 -3.4 2,673,538 + RR42_RS32430 0.69 -3.7 2,673,538 + RR42_RS32430 0.69 +0.2 2,673,722 + +0.7 2,673,722 + -0.3 2,673,722 + -0.5 2,673,723 - +0.7 2,673,723 - +0.2 2,673,723 - +0.2 2,673,726 + -1.5 2,673,906 - +0.8 2,673,906 - +0.0 2,673,912 + +0.3 2,673,913 - +0.8 2,673,913 - -0.6 2,673,913 - +0.3 2,673,913 - -0.0 2,673,986 + RR42_RS32435 0.12 +1.3 2,673,986 + RR42_RS32435 0.12 -0.4 2,674,074 + RR42_RS32435 0.21 -3.3 2,674,237 - RR42_RS32435 0.38 -0.5 2,674,237 - RR42_RS32435 0.38 -1.4 2,674,260 + RR42_RS32435 0.40 +2.2 2,674,260 + RR42_RS32435 0.40 +1.9 2,674,261 - RR42_RS32435 0.40 -1.8 2,674,261 - RR42_RS32435 0.40 +0.3 2,674,440 + RR42_RS32435 0.59 +0.8 2,674,441 - RR42_RS32435 0.59 +0.1 2,674,608 + RR42_RS32435 0.76 +0.6 2,674,608 + RR42_RS32435 0.76 +0.4 2,674,609 - RR42_RS32435 0.77 +0.3
Or see this region's nucleotide sequence