Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31415

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,424,826	-		RR42_RS31410	0.77	-1.8
2,424,921	-		RR42_RS31410	0.85	+1.1
2,424,923	+		RR42_RS31410	0.85	+0.4
2,424,924	-		RR42_RS31410	0.85	+0.3
2,424,957	+		RR42_RS31410	0.87	+0.2
2,424,957	+		RR42_RS31410	0.87	+0.5
2,425,104	+				+0.2
2,425,194	+				+0.7
2,425,194	+				-1.0
2,425,207	+				-0.1
2,425,248	+				+1.2
2,425,248	+				+1.0
2,425,327	-				+0.5
2,425,501	-				-2.0
2,425,540	-				+0.2
2,425,611	-				+0.8
2,425,747	+				+1.6
2,425,747	+				-2.2
2,425,747	+				-0.4
2,425,747	+				+0.6
2,425,747	+				+0.7
2,425,747	+				-1.0
2,425,748	-				-1.0
2,425,748	-				+0.5
2,425,753	+				-0.2
2,425,795	+				-0.7
2,425,832	+				+0.0
2,425,861	-				+0.3
2,426,036	+				+0.9
2,426,036	+				-1.6
2,426,163	+				+0.4
2,426,164	-				-1.4
2,426,164	-				-0.6
2,426,165	+				+1.0
2,426,166	-				-0.5
2,426,166	-				-1.0
2,426,166	-				-1.0
2,426,166	-				-0.9
2,426,166	-				-0.5
2,426,308	+				-1.0
2,426,308	+				+0.4
2,426,309	-				-0.1
2,426,309	-				+1.5
2,426,309	-				+0.7
2,426,368	+		RR42_RS31415	0.11	-0.1
2,426,369	-		RR42_RS31415	0.11	-0.7
2,426,389	+		RR42_RS31415	0.11	-1.0
2,426,389	+		RR42_RS31415	0.11	-1.6
2,426,390	-		RR42_RS31415	0.11	-0.3
2,426,490	-		RR42_RS31415	0.13	-1.6
2,426,588	+		RR42_RS31415	0.15	+1.6
2,426,588	+		RR42_RS31415	0.15	+0.6
2,426,873	-		RR42_RS31415	0.20	-0.6
2,426,934	-		RR42_RS31415	0.21	+1.6
2,427,211	+		RR42_RS31415	0.26	+0.6
2,427,234	-		RR42_RS31415	0.26	+2.4
2,427,250	-		RR42_RS31415	0.27	+0.7
2,427,259	+		RR42_RS31415	0.27	-1.1
2,427,296	+		RR42_RS31415	0.28	-0.4
2,427,296	+		RR42_RS31415	0.28	+0.5
2,427,296	+		RR42_RS31415	0.28	+1.4
2,427,336	-		RR42_RS31415	0.28	+1.1
2,427,374	+		RR42_RS31415	0.29	+2.4
2,427,374	+		RR42_RS31415	0.29	-1.2
2,427,375	-		RR42_RS31415	0.29	+0.3
2,427,777	+		RR42_RS31415	0.36	-1.3
2,427,778	-		RR42_RS31415	0.36	-1.8
2,427,902	+		RR42_RS31415	0.39	-0.6
2,427,954	+		RR42_RS31415	0.40	+0.2
2,427,955	-		RR42_RS31415	0.40	-1.0
2,427,955	-		RR42_RS31415	0.40	-0.8
2,427,955	-		RR42_RS31415	0.40	+0.3
2,427,955	-		RR42_RS31415	0.40	+1.2
2,427,955	-		RR42_RS31415	0.40	+0.4
2,428,034	-		RR42_RS31415	0.41	+2.3
2,428,034	-		RR42_RS31415	0.41	-0.7
2,428,051	+		RR42_RS31415	0.41	+1.2
2,428,051	+		RR42_RS31415	0.41	+0.2
2,428,051	+		RR42_RS31415	0.41	+0.2
2,428,051	+		RR42_RS31415	0.41	+0.0
2,428,052	-		RR42_RS31415	0.41	+0.2
2,428,366	+		RR42_RS31415	0.47	+0.0
2,428,366	+		RR42_RS31415	0.47	+0.2
2,428,367	-		RR42_RS31415	0.47	+1.0
2,428,492	+		RR42_RS31415	0.49	+0.7
2,428,493	-		RR42_RS31415	0.49	+0.5
2,428,584	+		RR42_RS31415	0.51	-2.4
2,428,624	+		RR42_RS31415	0.52	+0.5
2,428,624	+		RR42_RS31415	0.52	-0.6
2,428,624	+		RR42_RS31415	0.52	-0.0
2,428,809	+		RR42_RS31415	0.55	-1.0
2,428,810	-		RR42_RS31415	0.55	+0.7
2,428,810	-		RR42_RS31415	0.55	-1.2
2,428,810	-		RR42_RS31415	0.55	-0.5
2,428,813	+		RR42_RS31415	0.55	-0.3
2,428,814	-		RR42_RS31415	0.55	+0.7
2,428,814	-		RR42_RS31415	0.55	+0.5
2,428,843	-		RR42_RS31415	0.56	+0.2
2,429,047	+		RR42_RS31415	0.59	-1.9
2,429,048	-		RR42_RS31415	0.59	+0.5
2,429,145	-		RR42_RS31415	0.61	+0.8
2,429,210	-		RR42_RS31415	0.62	-0.0
2,429,218	+		RR42_RS31415	0.63	+0.4
2,429,219	-		RR42_RS31415	0.63	+0.8
2,429,219	-		RR42_RS31415	0.63	+0.5
2,429,420	-		RR42_RS31415	0.66	-0.0
2,429,500	+		RR42_RS31415	0.68	+0.4
2,429,501	-		RR42_RS31415	0.68	-0.9
2,429,856	+		RR42_RS31415	0.74	-0.4
2,429,923	+		RR42_RS31415	0.75	-2.9
2,429,923	+		RR42_RS31415	0.75	-1.0
2,429,923	+		RR42_RS31415	0.75	-0.6
2,429,924	-		RR42_RS31415	0.75	-3.1
2,429,996	-		RR42_RS31415	0.77	-0.3
2,430,043	-		RR42_RS31415	0.78	+0.8
2,430,166	-		RR42_RS31415	0.80	-1.4
2,430,473	+		RR42_RS31415	0.85	-0.3
2,430,517	+		RR42_RS31415	0.86	-2.4
2,430,518	-		RR42_RS31415	0.86	+0.0
2,430,733	-				-0.3
2,430,881	+				-2.6
2,430,882	-				+0.8
2,430,882	-				+0.2
2,430,987	+				+0.1
2,430,988	-				-0.7
2,431,143	+				-0.6
2,431,144	-				-0.2
2,431,276	+				-0.2
2,431,276	+				+0.1
2,431,276	+				+0.7
2,431,277	-				-1.3
2,431,277	-				-0.5
2,431,277	-				+0.5
2,431,349	+				+1.0
2,431,426	+		RR42_RS31420	0.17	-1.3
2,431,426	+		RR42_RS31420	0.17	+2.1
2,431,430	+		RR42_RS31420	0.18	+0.6
2,431,537	+		RR42_RS31420	0.34	-1.0
2,431,538	-		RR42_RS31420	0.34	-1.6
2,431,538	-		RR42_RS31420	0.34	+0.7
2,431,538	-		RR42_RS31420	0.34	+1.7
2,431,655	-		RR42_RS31420	0.52	-0.3
2,431,809	-		RR42_RS31420	0.76	-1.5
2,432,053	+				-1.0
2,432,054	-				-1.6
2,432,054	-				-1.4
2,432,054	-				+0.3
2,432,082	+				-0.3
2,432,083	-				+0.1
2,432,083	-				+1.2
2,432,083	-				-1.0
2,432,084	+				-1.8
2,432,172	+				+0.2
2,432,172	+				+0.5
2,432,231	-				-0.0
2,432,266	+				-1.9
2,432,267	-				-0.3
2,432,270	-				+1.0
2,432,270	-				+0.4