Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31260

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31245 and RR42_RS31250 are separated by 6 nucleotidesRR42_RS31250 and RR42_RS31255 are separated by 87 nucleotidesRR42_RS31255 and RR42_RS31260 overlap by 14 nucleotidesRR42_RS31260 and RR42_RS31265 overlap by 8 nucleotides RR42_RS31245: RR42_RS31245 - membrane protein, at 2,386,811 to 2,387,359 _RS31245 RR42_RS31250: RR42_RS31250 - acyl carrier protein, at 2,387,366 to 2,387,623 _RS31250 RR42_RS31255: RR42_RS31255 - acyl carrier protein, at 2,387,711 to 2,387,986 _RS31255 RR42_RS31260: RR42_RS31260 - acyltransferase, at 2,387,973 to 2,388,749 _RS31260 RR42_RS31265: RR42_RS31265 - hypothetical protein, at 2,388,742 to 2,389,470 _RS31265 Position (kb) 2387 2388 2389Strain fitness (log2 ratio) -2 -1 0 1 2at 2387.301 kb on + strand, within RR42_RS31245at 2387.301 kb on + strand, within RR42_RS31245at 2387.317 kb on - strandat 2387.681 kb on - strandat 2387.681 kb on - strandat 2387.681 kb on - strandat 2388.016 kb on - strandat 2388.109 kb on + strand, within RR42_RS31260at 2388.109 kb on + strand, within RR42_RS31260at 2388.110 kb on - strand, within RR42_RS31260at 2388.110 kb on - strand, within RR42_RS31260at 2388.110 kb on - strand, within RR42_RS31260at 2388.110 kb on - strand, within RR42_RS31260at 2388.358 kb on + strand, within RR42_RS31260at 2388.359 kb on - strand, within RR42_RS31260at 2388.533 kb on - strand, within RR42_RS31260at 2388.583 kb on + strand, within RR42_RS31260at 2388.584 kb on - strand, within RR42_RS31260at 2388.974 kb on + strand, within RR42_RS31265at 2388.974 kb on + strand, within RR42_RS31265at 2388.974 kb on + strand, within RR42_RS31265at 2388.975 kb on - strand, within RR42_RS31265at 2388.998 kb on + strand, within RR42_RS31265at 2388.998 kb on + strand, within RR42_RS31265at 2388.999 kb on - strand, within RR42_RS31265at 2389.127 kb on + strand, within RR42_RS31265at 2389.147 kb on - strand, within RR42_RS31265at 2389.286 kb on + strand, within RR42_RS31265at 2389.286 kb on + strand, within RR42_RS31265at 2389.286 kb on + strand, within RR42_RS31265at 2389.287 kb on - strand, within RR42_RS31265at 2389.427 kb on - strandat 2389.427 kb on - strandat 2389.427 kb on - strandat 2389.487 kb on + strandat 2389.488 kb on - strandat 2389.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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2,387,301 + RR42_RS31245 0.89 -0.8
2,387,301 + RR42_RS31245 0.89 +0.4
2,387,317 - +1.1
2,387,681 - +0.0
2,387,681 - -2.2
2,387,681 - -1.8
2,388,016 - -0.4
2,388,109 + RR42_RS31260 0.18 +0.9
2,388,109 + RR42_RS31260 0.18 +0.7
2,388,110 - RR42_RS31260 0.18 +0.2
2,388,110 - RR42_RS31260 0.18 +0.0
2,388,110 - RR42_RS31260 0.18 +0.3
2,388,110 - RR42_RS31260 0.18 +0.5
2,388,358 + RR42_RS31260 0.50 -0.6
2,388,359 - RR42_RS31260 0.50 +1.8
2,388,533 - RR42_RS31260 0.72 +2.0
2,388,583 + RR42_RS31260 0.79 -0.9
2,388,584 - RR42_RS31260 0.79 -1.6
2,388,974 + RR42_RS31265 0.32 -0.8
2,388,974 + RR42_RS31265 0.32 +0.2
2,388,974 + RR42_RS31265 0.32 +0.8
2,388,975 - RR42_RS31265 0.32 -2.6
2,388,998 + RR42_RS31265 0.35 +0.9
2,388,998 + RR42_RS31265 0.35 -0.0
2,388,999 - RR42_RS31265 0.35 -0.0
2,389,127 + RR42_RS31265 0.53 +0.7
2,389,147 - RR42_RS31265 0.56 -1.8
2,389,286 + RR42_RS31265 0.75 -2.3
2,389,286 + RR42_RS31265 0.75 +2.3
2,389,286 + RR42_RS31265 0.75 -0.4
2,389,287 - RR42_RS31265 0.75 -0.0
2,389,427 - +1.0
2,389,427 - -0.9
2,389,427 - +0.4
2,389,487 + +0.6
2,389,488 - -1.8
2,389,488 - +1.0

Or see this region's nucleotide sequence