Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30935

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS30930 and RR42_RS30935 are separated by 171 nucleotidesRR42_RS30935 and RR42_RS30940 are separated by 74 nucleotides RR42_RS30930: RR42_RS30930 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 2,320,344 to 2,322,734 _RS30930 RR42_RS30935: RR42_RS30935 - hypothetical protein, at 2,322,906 to 2,323,310 _RS30935 RR42_RS30940: RR42_RS30940 - cobalt-zinc-cadmium resistance protein, at 2,323,385 to 2,324,653 _RS30940 Position (kb) 2322 2323 2324Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2322.140 kb on - strand, within RR42_RS30930at 2322.156 kb on + strand, within RR42_RS30930at 2322.381 kb on - strand, within RR42_RS30930at 2322.503 kb on - strandat 2322.647 kb on + strandat 2322.647 kb on + strandat 2322.647 kb on + strandat 2322.647 kb on + strandat 2322.823 kb on - strandat 2322.856 kb on + strandat 2322.892 kb on - strandat 2322.892 kb on - strandat 2322.892 kb on - strandat 2322.893 kb on + strandat 2322.893 kb on + strandat 2322.893 kb on + strandat 2322.893 kb on + strandat 2322.894 kb on - strandat 2322.894 kb on - strandat 2322.896 kb on - strandat 2322.896 kb on - strandat 2322.896 kb on - strandat 2322.896 kb on - strandat 2323.052 kb on + strand, within RR42_RS30935at 2323.053 kb on - strand, within RR42_RS30935at 2323.233 kb on + strand, within RR42_RS30935at 2323.254 kb on + strand, within RR42_RS30935at 2323.254 kb on + strand, within RR42_RS30935at 2323.255 kb on - strand, within RR42_RS30935at 2323.255 kb on - strand, within RR42_RS30935at 2323.330 kb on + strandat 2323.684 kb on + strand, within RR42_RS30940at 2323.684 kb on + strand, within RR42_RS30940

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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2,322,140 - RR42_RS30930 0.75 +1.6
2,322,156 + RR42_RS30930 0.76 +3.7
2,322,381 - RR42_RS30930 0.85 +3.8
2,322,503 - +2.8
2,322,647 + +2.2
2,322,647 + +0.3
2,322,647 + +1.7
2,322,647 + +2.6
2,322,823 - -1.4
2,322,856 + +0.2
2,322,892 - +1.0
2,322,892 - -0.2
2,322,892 - -0.5
2,322,893 + +0.9
2,322,893 + -0.8
2,322,893 + +0.4
2,322,893 + +0.0
2,322,894 - -1.1
2,322,894 - -2.0
2,322,896 - +0.8
2,322,896 - +0.6
2,322,896 - -0.1
2,322,896 - -3.4
2,323,052 + RR42_RS30935 0.36 -0.2
2,323,053 - RR42_RS30935 0.36 +0.7
2,323,233 + RR42_RS30935 0.81 -0.4
2,323,254 + RR42_RS30935 0.86 -0.1
2,323,254 + RR42_RS30935 0.86 -0.6
2,323,255 - RR42_RS30935 0.86 -1.0
2,323,255 - RR42_RS30935 0.86 +0.2
2,323,330 + +2.4
2,323,684 + RR42_RS30940 0.24 -2.5
2,323,684 + RR42_RS30940 0.24 -0.2

Or see this region's nucleotide sequence