Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30905

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS30895 and RR42_RS30900 overlap by 4 nucleotidesRR42_RS30900 and RR42_RS30905 are separated by 48 nucleotidesRR42_RS30905 and RR42_RS30910 overlap by 22 nucleotidesRR42_RS30910 and RR42_RS30915 overlap by 13 nucleotides RR42_RS30895: RR42_RS30895 - 4-amino-4-deoxy-L-arabinose transferase, at 2,312,928 to 2,314,700 _RS30895 RR42_RS30900: RR42_RS30900 - 4-amino-4-deoxy-L-arabinose transferase, at 2,314,697 to 2,315,068 _RS30900 RR42_RS30905: RR42_RS30905 - aminotransferase DegT, at 2,315,117 to 2,316,280 _RS30905 RR42_RS30910: RR42_RS30910 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 2,316,259 to 2,317,251 _RS30910 RR42_RS30915: RR42_RS30915 - formyltransferase, at 2,317,239 to 2,318,198 _RS30915 Position (kb) 2315 2316 2317Strain fitness (log2 ratio) -1 0 1 2 3at 2314.708 kb on + strandat 2314.708 kb on + strandat 2315.516 kb on + strand, within RR42_RS30905at 2315.912 kb on + strand, within RR42_RS30905at 2316.122 kb on + strand, within RR42_RS30905at 2316.250 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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2,314,708 + +2.7
2,314,708 + +3.3
2,315,516 + RR42_RS30905 0.34 +0.6
2,315,912 + RR42_RS30905 0.68 +1.3
2,316,122 + RR42_RS30905 0.86 -0.0
2,316,250 + +1.4

Or see this region's nucleotide sequence