Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30390

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,190,995	+		RR42_RS30385	0.50	-1.1
2,191,013	-		RR42_RS30385	0.51	-2.6
2,191,156	+		RR42_RS30385	0.65	-1.9
2,191,156	+		RR42_RS30385	0.65	-1.4
2,191,156	+		RR42_RS30385	0.65	-0.0
2,191,157	-		RR42_RS30385	0.65	-0.7
2,191,157	-		RR42_RS30385	0.65	+1.2
2,191,216	+		RR42_RS30385	0.70	-1.2
2,191,216	+		RR42_RS30385	0.70	+0.1
2,191,216	+		RR42_RS30385	0.70	-1.4
2,191,217	-		RR42_RS30385	0.70	-1.8
2,191,307	+		RR42_RS30385	0.79	+0.0
2,191,307	+		RR42_RS30385	0.79	-1.5
2,191,308	-		RR42_RS30385	0.79	-0.0
2,191,311	-		RR42_RS30385	0.79	-0.6
2,191,642	-				-2.6
2,191,650	+				-0.5
2,191,650	+				+0.4
2,191,650	+				+2.1
2,191,650	+				-0.0
2,191,650	+				-1.6
2,191,650	+				+0.5
2,191,650	+				+1.1
2,191,650	+				-2.4
2,191,650	+				-2.2
2,191,650	+				-0.4
2,191,650	+				+1.7
2,191,651	-				+0.3
2,191,651	-				-0.4
2,191,651	-				+2.4
2,191,651	-				-1.4
2,191,651	-				+0.0
2,191,651	-				-0.2
2,191,651	-				+0.6
2,191,651	-				+1.8
2,191,651	-				-1.4
2,191,651	-				+0.3
2,191,651	-				-0.4
2,191,651	-				+0.6
2,191,664	-				+0.1
2,191,664	-				+1.1
2,191,668	-				-0.2
2,191,668	-				-0.0
2,191,671	+				-0.8
2,191,675	+				+0.1
2,191,685	-				+0.2
2,191,801	+				-0.8
2,191,845	-				-1.6
2,192,174	-				+1.0
2,192,174	-				+0.3
2,192,446	+		RR42_RS30390	0.15	-1.4
2,192,446	+		RR42_RS30390	0.15	-2.4
2,192,446	+		RR42_RS30390	0.15	-0.5
2,192,447	-		RR42_RS30390	0.15	-1.2
2,192,447	-		RR42_RS30390	0.15	-1.4
2,192,447	-		RR42_RS30390	0.15	-0.3
2,192,521	+		RR42_RS30390	0.18	-0.1
2,192,522	-		RR42_RS30390	0.18	+0.5
2,192,701	+		RR42_RS30390	0.24	+0.6
2,192,701	+		RR42_RS30390	0.24	+0.2
2,192,701	+		RR42_RS30390	0.24	+2.7
2,192,702	-		RR42_RS30390	0.24	-0.7
2,192,702	-		RR42_RS30390	0.24	+2.4
2,192,908	+		RR42_RS30390	0.30	+0.6
2,193,125	+		RR42_RS30390	0.38	-0.2
2,193,126	-		RR42_RS30390	0.38	+0.6
2,193,172	+		RR42_RS30390	0.39	-0.0
2,193,173	-		RR42_RS30390	0.39	-1.1
2,193,362	-		RR42_RS30390	0.45	-1.6
2,193,412	-		RR42_RS30390	0.47	+0.5
2,193,809	+		RR42_RS30390	0.60	-0.1
2,193,809	+		RR42_RS30390	0.60	-0.3
2,193,810	-		RR42_RS30390	0.60	+0.9
2,193,810	-		RR42_RS30390	0.60	-0.1
2,193,810	-		RR42_RS30390	0.60	+2.3
2,194,094	+		RR42_RS30390	0.69	+1.3
2,194,094	+		RR42_RS30390	0.69	+1.3
2,194,095	-		RR42_RS30390	0.69	+2.5
2,194,120	+		RR42_RS30390	0.70	-0.9
2,194,121	-		RR42_RS30390	0.70	-2.5
2,194,121	-		RR42_RS30390	0.70	+2.4
2,194,196	+		RR42_RS30390	0.73	+0.7
2,194,196	+		RR42_RS30390	0.73	-1.2
2,194,196	+		RR42_RS30390	0.73	+0.4
2,194,198	+		RR42_RS30390	0.73	-0.2
2,194,199	-		RR42_RS30390	0.73	+0.5
2,194,199	-		RR42_RS30390	0.73	-1.2
2,194,199	-		RR42_RS30390	0.73	+0.4
2,194,229	+		RR42_RS30390	0.74	-0.6
2,194,261	+		RR42_RS30390	0.75	-1.4
2,194,262	-		RR42_RS30390	0.75	+0.0
2,194,300	+		RR42_RS30390	0.76	+0.2
2,194,569	+		RR42_RS30390	0.85	-0.0
2,194,569	+		RR42_RS30390	0.85	+0.2
2,194,856	-				+1.1
2,195,035	+				-1.4
2,195,036	-				+0.5
2,195,036	-				-1.7
2,195,036	-				-1.0
2,195,214	-				+0.4
2,195,252	-		RR42_RS30395	0.12	-0.7
2,195,419	+		RR42_RS30395	0.25	+0.2
2,195,419	+		RR42_RS30395	0.25	-3.6
2,195,420	-		RR42_RS30395	0.25	+1.1
2,195,420	-		RR42_RS30395	0.25	-0.1
2,195,517	-		RR42_RS30395	0.33	+0.5
2,195,623	+		RR42_RS30395	0.41	-1.0
2,195,623	+		RR42_RS30395	0.41	+2.5
2,195,623	+		RR42_RS30395	0.41	+0.5
2,195,623	+		RR42_RS30395	0.41	-0.3
2,195,623	+		RR42_RS30395	0.41	+1.1
2,195,624	-		RR42_RS30395	0.41	+1.2
2,195,624	-		RR42_RS30395	0.41	-0.6
2,195,624	-		RR42_RS30395	0.41	-1.2
2,195,627	+		RR42_RS30395	0.41	-0.5
2,195,627	+		RR42_RS30395	0.41	+1.5
2,195,627	+		RR42_RS30395	0.41	-0.6
2,195,627	+		RR42_RS30395	0.41	+3.8
2,195,627	+		RR42_RS30395	0.41	-0.1
2,195,628	-		RR42_RS30395	0.41	-1.5
2,195,628	-		RR42_RS30395	0.41	+1.3
2,195,689	+		RR42_RS30395	0.46	+0.8
2,195,689	+		RR42_RS30395	0.46	+0.1
2,195,690	-		RR42_RS30395	0.46	+0.8
2,195,690	-		RR42_RS30395	0.46	+0.8
2,195,690	-		RR42_RS30395	0.46	-0.5
2,195,872	+		RR42_RS30395	0.61	+0.2
2,195,872	+		RR42_RS30395	0.61	-1.0
2,195,872	+		RR42_RS30395	0.61	+0.0
2,195,873	-		RR42_RS30395	0.61	-0.8
2,195,893	+		RR42_RS30395	0.62	+0.5
2,195,894	-		RR42_RS30395	0.62	-0.2