Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29950

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,084,860	+		RR42_RS29940	0.79	-1.9
2,084,860	+		RR42_RS29940	0.79	+0.4
2,084,861	-		RR42_RS29940	0.79	+1.6
2,084,968	-				+1.2
2,085,024	+				-3.6
2,085,073	+				-0.1
2,085,329	+		RR42_RS29945	0.41	-0.4
2,085,329	+		RR42_RS29945	0.41	+0.3
2,085,329	+		RR42_RS29945	0.41	+0.9
2,085,330	-		RR42_RS29945	0.41	-1.4
2,085,330	-		RR42_RS29945	0.41	-0.2
2,085,348	+		RR42_RS29945	0.44	+0.7
2,085,348	+		RR42_RS29945	0.44	+1.2
2,085,384	-		RR42_RS29945	0.49	-2.4
2,085,548	-		RR42_RS29945	0.71	-1.1
2,085,548	-		RR42_RS29945	0.71	+0.7
2,085,575	-		RR42_RS29945	0.74	-0.7
2,085,575	-		RR42_RS29945	0.74	-0.1
2,085,676	-		RR42_RS29945	0.88	-0.2
2,085,676	-		RR42_RS29945	0.88	-3.1
2,085,676	-		RR42_RS29945	0.88	+1.3
2,085,749	-				+0.2
2,085,749	-				+0.1
2,085,749	-				+0.5
2,085,801	+				-0.6
2,085,802	-				+0.1
2,085,802	-				-3.5
2,085,802	-				+2.4
2,085,802	-				+2.7
2,085,802	-				-3.2
2,085,802	-				-0.1
2,085,850	+				+0.5
2,085,851	-				-0.4
2,085,851	-				-1.9
2,085,909	-		RR42_RS29950	0.12	-0.1
2,085,909	-		RR42_RS29950	0.12	+0.4
2,085,966	+		RR42_RS29950	0.16	+0.1
2,085,966	+		RR42_RS29950	0.16	-0.7
2,085,967	-		RR42_RS29950	0.16	-1.4
2,086,037	+		RR42_RS29950	0.22	+0.8
2,086,037	+		RR42_RS29950	0.22	+0.6
2,086,037	+		RR42_RS29950	0.22	-0.1
2,086,038	-		RR42_RS29950	0.22	+1.2
2,086,042	-		RR42_RS29950	0.22	-0.0
2,086,042	-		RR42_RS29950	0.22	-3.1
2,086,042	-		RR42_RS29950	0.22	+1.3
2,086,047	+		RR42_RS29950	0.23	+0.2
2,086,047	+		RR42_RS29950	0.23	+0.4
2,086,173	-		RR42_RS29950	0.33	+0.9
2,086,255	+		RR42_RS29950	0.39	+0.2
2,086,255	+		RR42_RS29950	0.39	-0.1
2,086,256	-		RR42_RS29950	0.39	+0.9
2,086,256	-		RR42_RS29950	0.39	+0.1
2,086,263	+		RR42_RS29950	0.40	-1.8
2,086,264	-		RR42_RS29950	0.40	+0.7
2,086,289	+		RR42_RS29950	0.42	+0.1
2,086,469	+		RR42_RS29950	0.56	+0.5
2,086,469	+		RR42_RS29950	0.56	-1.9
2,086,469	+		RR42_RS29950	0.56	+0.3
2,086,470	-		RR42_RS29950	0.56	+0.4
2,086,470	-		RR42_RS29950	0.56	-3.2
2,086,549	+		RR42_RS29950	0.62	+1.0
2,086,589	+		RR42_RS29950	0.65	-3.4
2,086,608	-		RR42_RS29950	0.67	-2.8
2,086,635	+		RR42_RS29950	0.69	-0.6
2,086,636	-		RR42_RS29950	0.69	+0.7
2,086,636	-		RR42_RS29950	0.69	+0.2
2,086,643	+		RR42_RS29950	0.70	+1.5
2,086,644	-		RR42_RS29950	0.70	-1.2
2,086,644	-		RR42_RS29950	0.70	+0.2
2,086,680	-		RR42_RS29950	0.72	+0.9
2,086,680	-		RR42_RS29950	0.72	+0.1
2,086,680	-		RR42_RS29950	0.72	-1.9
2,086,714	-		RR42_RS29950	0.75	+1.6
2,086,723	+		RR42_RS29950	0.76	+0.9
2,086,723	+		RR42_RS29950	0.76	-1.3
2,086,723	+		RR42_RS29950	0.76	+1.4
2,086,724	-		RR42_RS29950	0.76	+0.0
2,086,829	+		RR42_RS29950	0.84	-0.5
2,086,893	+		RR42_RS29950	0.89	+0.3
2,086,893	+		RR42_RS29950	0.89	-0.7
2,086,894	-		RR42_RS29950	0.89	+0.4
2,086,959	+				+0.5
2,086,990	-				-1.4
2,087,012	-				+0.2
2,087,028	+				-2.8
2,087,071	-				+1.0
2,087,200	+		RR42_RS29955	0.11	+0.3
2,087,253	+		RR42_RS29955	0.15	-3.1
2,087,254	-		RR42_RS29955	0.15	-0.6
2,087,254	-		RR42_RS29955	0.15	-0.2
2,087,346	+		RR42_RS29955	0.21	-0.3
2,087,346	+		RR42_RS29955	0.21	+0.7
2,087,347	-		RR42_RS29955	0.22	-1.9
2,087,347	-		RR42_RS29955	0.22	-0.4
2,087,347	-		RR42_RS29955	0.22	-0.4
2,087,347	-		RR42_RS29955	0.22	+0.2
2,087,347	-		RR42_RS29955	0.22	+2.2
2,087,350	+		RR42_RS29955	0.22	-0.6
2,087,350	+		RR42_RS29955	0.22	-3.6
2,087,350	+		RR42_RS29955	0.22	-0.1
2,087,351	-		RR42_RS29955	0.22	+0.4
2,087,351	-		RR42_RS29955	0.22	-0.6
2,087,351	-		RR42_RS29955	0.22	-0.9
2,087,351	-		RR42_RS29955	0.22	-2.2
2,087,351	-		RR42_RS29955	0.22	-2.6
2,087,456	+		RR42_RS29955	0.29	-2.0
2,087,694	-		RR42_RS29955	0.46	+0.7
2,087,694	-		RR42_RS29955	0.46	-0.8
2,087,737	+		RR42_RS29955	0.49	+0.0
2,087,738	-		RR42_RS29955	0.49	-0.1
2,087,797	+		RR42_RS29955	0.53	-0.4
2,087,798	-		RR42_RS29955	0.53	+0.2
2,087,911	+		RR42_RS29955	0.61	-1.0
2,087,912	-		RR42_RS29955	0.61	+0.1
2,088,028	+		RR42_RS29955	0.70	-1.6
2,088,028	+		RR42_RS29955	0.70	-1.0