Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS29115 and RR42_RS29120 are separated by 8 nucleotides RR42_RS29120 and RR42_RS29125 are separated by 176 nucleotides RR42_RS29125 and RR42_RS29130 are separated by 45 nucleotides
RR42_RS29115: RR42_RS29115 - LysR family transcriptional regulator, at 1,888,706 to 1,889,632
_RS29115
RR42_RS29120: RR42_RS29120 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 1,889,641 to 1,890,408
_RS29120
RR42_RS29125: RR42_RS29125 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 1,890,585 to 1,890,959
_RS29125
RR42_RS29130: RR42_RS29130 - dehydrogenase, at 1,891,005 to 1,892,099
_RS29130
Position (kb) 1889
1890
1891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1888.652 kb on - strand at 1888.748 kb on - strand at 1888.748 kb on - strand at 1888.961 kb on - strand, within RR42_RS29115 at 1889.193 kb on + strand, within RR42_RS29115 at 1889.194 kb on - strand, within RR42_RS29115 at 1889.204 kb on + strand, within RR42_RS29115 at 1889.205 kb on - strand, within RR42_RS29115 at 1889.434 kb on - strand, within RR42_RS29115 at 1889.468 kb on + strand, within RR42_RS29115 at 1889.537 kb on + strand, within RR42_RS29115 at 1889.537 kb on + strand, within RR42_RS29115 at 1889.976 kb on + strand, within RR42_RS29120 at 1889.976 kb on + strand, within RR42_RS29120 at 1889.977 kb on - strand, within RR42_RS29120 at 1889.977 kb on - strand, within RR42_RS29120 at 1889.977 kb on - strand, within RR42_RS29120 at 1889.977 kb on - strand, within RR42_RS29120 at 1889.999 kb on + strand, within RR42_RS29120 at 1890.000 kb on - strand, within RR42_RS29120 at 1890.043 kb on + strand, within RR42_RS29120 at 1891.283 kb on + strand, within RR42_RS29130 at 1891.283 kb on + strand, within RR42_RS29130 at 1891.284 kb on - strand, within RR42_RS29130 at 1891.284 kb on - strand, within RR42_RS29130 at 1891.384 kb on + strand, within RR42_RS29130 at 1891.384 kb on + strand, within RR42_RS29130 at 1891.385 kb on - strand, within RR42_RS29130 at 1891.385 kb on - strand, within RR42_RS29130
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,888,652 - -0.8 1,888,748 - +0.9 1,888,748 - +1.2 1,888,961 - RR42_RS29115 0.28 -0.3 1,889,193 + RR42_RS29115 0.53 +0.4 1,889,194 - RR42_RS29115 0.53 +0.6 1,889,204 + RR42_RS29115 0.54 -3.1 1,889,205 - RR42_RS29115 0.54 -1.1 1,889,434 - RR42_RS29115 0.79 -0.1 1,889,468 + RR42_RS29115 0.82 -2.0 1,889,537 + RR42_RS29115 0.90 -1.7 1,889,537 + RR42_RS29115 0.90 +1.6 1,889,976 + RR42_RS29120 0.44 -0.2 1,889,976 + RR42_RS29120 0.44 +0.9 1,889,977 - RR42_RS29120 0.44 +1.3 1,889,977 - RR42_RS29120 0.44 -0.1 1,889,977 - RR42_RS29120 0.44 -0.2 1,889,977 - RR42_RS29120 0.44 -0.5 1,889,999 + RR42_RS29120 0.47 +1.5 1,890,000 - RR42_RS29120 0.47 +2.3 1,890,043 + RR42_RS29120 0.52 +0.1 1,891,283 + RR42_RS29130 0.25 +1.1 1,891,283 + RR42_RS29130 0.25 -1.1 1,891,284 - RR42_RS29130 0.25 +0.0 1,891,284 - RR42_RS29130 0.25 +0.1 1,891,384 + RR42_RS29130 0.35 -0.6 1,891,384 + RR42_RS29130 0.35 -0.3 1,891,385 - RR42_RS29130 0.35 +1.7 1,891,385 - RR42_RS29130 0.35 -0.5
Or see this region's nucleotide sequence