Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29050

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,871,684	-		RR42_RS29045	0.20	-1.1
1,871,684	-		RR42_RS29045	0.20	-0.5
1,871,728	+		RR42_RS29045	0.24	+0.5
1,871,729	-		RR42_RS29045	0.24	+0.7
1,871,830	+		RR42_RS29045	0.35	+0.9
1,871,887	+		RR42_RS29045	0.41	+0.9
1,872,127	+		RR42_RS29045	0.66	+0.4
1,872,128	-		RR42_RS29045	0.66	-1.9
1,872,172	+		RR42_RS29045	0.70	-0.3
1,872,172	+		RR42_RS29045	0.70	-3.0
1,872,172	+		RR42_RS29045	0.70	-0.1
1,872,173	-		RR42_RS29045	0.71	-1.4
1,872,173	-		RR42_RS29045	0.71	-2.5
1,872,173	-		RR42_RS29045	0.71	+0.2
1,872,173	-		RR42_RS29045	0.71	+0.9
1,872,251	-		RR42_RS29045	0.79	+0.3
1,872,289	+		RR42_RS29045	0.83	+0.2
1,872,289	+		RR42_RS29045	0.83	+0.9
1,872,293	-		RR42_RS29045	0.83	-0.2
1,872,293	-		RR42_RS29045	0.83	+0.6
1,872,299	-		RR42_RS29045	0.84	+0.9
1,872,299	-		RR42_RS29045	0.84	-1.1
1,872,454	+				+1.4
1,872,455	-				-1.6
1,872,455	-				-0.6
1,872,501	+				+2.2
1,872,502	-				+1.0
1,872,506	+				+0.5
1,872,507	-				+0.2
1,872,507	-				-1.1
1,872,507	-				-0.5
1,872,507	-				-1.4
1,872,625	+				+0.1
1,872,651	+				-1.7
1,872,868	-		RR42_RS29050	0.15	-1.1
1,872,868	-		RR42_RS29050	0.15	-1.2
1,872,927	+		RR42_RS29050	0.18	+0.4
1,872,928	-		RR42_RS29050	0.18	+0.4
1,872,928	-		RR42_RS29050	0.18	+1.2
1,873,054	+		RR42_RS29050	0.26	+0.5
1,873,055	-		RR42_RS29050	0.26	-2.4
1,873,083	+		RR42_RS29050	0.28	-3.0
1,873,083	+		RR42_RS29050	0.28	-0.8
1,873,182	-		RR42_RS29050	0.34	-1.0
1,873,215	+		RR42_RS29050	0.36	-2.2
1,873,216	-		RR42_RS29050	0.36	+0.5
1,873,436	+		RR42_RS29050	0.50	+0.4
1,874,075	+				-2.9
1,874,076	-				-3.6
1,874,076	-				+0.7
1,874,178	+				+0.3
1,874,179	-				-0.7
1,874,179	-				+0.3
1,874,187	+				+0.3
1,874,187	+				+0.7
1,874,187	+				-0.0
1,874,187	+				+0.5
1,874,224	-				-1.7
1,874,387	+		RR42_RS29055	0.17	-0.3
1,874,389	+		RR42_RS29055	0.17	-2.3
1,874,389	+		RR42_RS29055	0.17	+0.2
1,874,390	-		RR42_RS29055	0.17	-0.1
1,874,390	-		RR42_RS29055	0.17	-0.7
1,874,390	-		RR42_RS29055	0.17	+0.4
1,874,390	-		RR42_RS29055	0.17	-2.1
1,874,791	+		RR42_RS29055	0.61	-0.1
1,874,792	-		RR42_RS29055	0.61	-1.2
1,874,849	-		RR42_RS29055	0.67	+0.4
1,874,849	-		RR42_RS29055	0.67	+0.4
1,874,864	+		RR42_RS29055	0.69	+0.1
1,874,865	-		RR42_RS29055	0.69	-0.0
1,874,865	-		RR42_RS29055	0.69	+0.3
1,874,936	+		RR42_RS29055	0.77	-0.3
1,874,936	+		RR42_RS29055	0.77	+0.1
1,874,998	+		RR42_RS29055	0.83	+1.0
1,874,999	-		RR42_RS29055	0.83	+0.1
1,874,999	-		RR42_RS29055	0.83	-0.2
1,874,999	-		RR42_RS29055	0.83	-2.1
1,875,121	+				+1.5
1,875,121	+				+0.1
1,875,131	-				+0.5
1,875,131	-				+1.6