Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28350 and RR42_RS28355 are separated by 2 nucleotides RR42_RS28355 and RR42_RS28360 are separated by 5 nucleotides RR42_RS28360 and RR42_RS28365 are separated by 12 nucleotides
RR42_RS28350: RR42_RS28350 - phthalate 4,5-dioxygenase, at 1,721,166 to 1,722,404
_RS28350
RR42_RS28355: RR42_RS28355 - amidohydrolase, at 1,722,407 to 1,723,411
_RS28355
RR42_RS28360: RR42_RS28360 - endoribonuclease L-PSP, at 1,723,417 to 1,723,818
_RS28360
RR42_RS28365: RR42_RS28365 - GntR family transcriptional regulator, at 1,723,831 to 1,724,544
_RS28365
Position (kb) 1722
1723
1724 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1721.546 kb on + strand, within RR42_RS28350 at 1721.665 kb on + strand, within RR42_RS28350 at 1721.698 kb on + strand, within RR42_RS28350 at 1721.746 kb on + strand, within RR42_RS28350 at 1721.747 kb on - strand, within RR42_RS28350 at 1722.244 kb on + strand, within RR42_RS28350 at 1722.245 kb on - strand, within RR42_RS28350 at 1722.307 kb on - strand at 1722.645 kb on + strand, within RR42_RS28355 at 1722.646 kb on - strand, within RR42_RS28355 at 1722.789 kb on + strand, within RR42_RS28355 at 1722.859 kb on + strand, within RR42_RS28355 at 1722.861 kb on + strand, within RR42_RS28355 at 1722.861 kb on + strand, within RR42_RS28355 at 1722.862 kb on - strand, within RR42_RS28355 at 1722.933 kb on + strand, within RR42_RS28355 at 1722.942 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.087 kb on - strand, within RR42_RS28355 at 1723.087 kb on - strand, within RR42_RS28355 at 1723.343 kb on + strand at 1723.343 kb on + strand at 1723.344 kb on - strand at 1723.359 kb on + strand at 1723.462 kb on + strand, within RR42_RS28360 at 1723.489 kb on + strand, within RR42_RS28360 at 1723.489 kb on + strand, within RR42_RS28360 at 1723.583 kb on + strand, within RR42_RS28360 at 1723.584 kb on - strand, within RR42_RS28360 at 1723.645 kb on - strand, within RR42_RS28360 at 1723.795 kb on + strand at 1723.796 kb on - strand at 1723.796 kb on - strand at 1723.796 kb on - strand at 1723.810 kb on - strand at 1723.823 kb on + strand at 1724.073 kb on + strand, within RR42_RS28365 at 1724.074 kb on - strand, within RR42_RS28365 at 1724.087 kb on + strand, within RR42_RS28365 at 1724.087 kb on + strand, within RR42_RS28365 at 1724.087 kb on + strand, within RR42_RS28365 at 1724.088 kb on - strand, within RR42_RS28365 at 1724.088 kb on - strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.108 kb on + strand, within RR42_RS28365 at 1724.108 kb on + strand, within RR42_RS28365 at 1724.109 kb on - strand, within RR42_RS28365 at 1724.145 kb on - strand, within RR42_RS28365 at 1724.274 kb on - strand, within RR42_RS28365 at 1724.274 kb on - strand, within RR42_RS28365
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,721,546 + RR42_RS28350 0.31 -0.5 1,721,665 + RR42_RS28350 0.40 -2.9 1,721,698 + RR42_RS28350 0.43 -1.8 1,721,746 + RR42_RS28350 0.47 -0.2 1,721,747 - RR42_RS28350 0.47 +0.2 1,722,244 + RR42_RS28350 0.87 +0.1 1,722,245 - RR42_RS28350 0.87 -0.2 1,722,307 - +0.7 1,722,645 + RR42_RS28355 0.24 +0.5 1,722,646 - RR42_RS28355 0.24 +0.4 1,722,789 + RR42_RS28355 0.38 -0.8 1,722,859 + RR42_RS28355 0.45 +1.4 1,722,861 + RR42_RS28355 0.45 +0.2 1,722,861 + RR42_RS28355 0.45 +0.3 1,722,862 - RR42_RS28355 0.45 -2.2 1,722,933 + RR42_RS28355 0.52 +1.3 1,722,942 + RR42_RS28355 0.53 -0.0 1,723,086 + RR42_RS28355 0.68 -1.4 1,723,086 + RR42_RS28355 0.68 -0.0 1,723,086 + RR42_RS28355 0.68 -0.4 1,723,086 + RR42_RS28355 0.68 -1.1 1,723,087 - RR42_RS28355 0.68 +1.2 1,723,087 - RR42_RS28355 0.68 -0.9 1,723,343 + -0.3 1,723,343 + -0.1 1,723,344 - +1.1 1,723,359 + -0.4 1,723,462 + RR42_RS28360 0.11 +0.5 1,723,489 + RR42_RS28360 0.18 +0.4 1,723,489 + RR42_RS28360 0.18 -1.5 1,723,583 + RR42_RS28360 0.41 +0.4 1,723,584 - RR42_RS28360 0.42 +0.5 1,723,645 - RR42_RS28360 0.57 -1.8 1,723,795 + +0.0 1,723,796 - -0.0 1,723,796 - +0.6 1,723,796 - -3.5 1,723,810 - -1.0 1,723,823 + -1.6 1,724,073 + RR42_RS28365 0.34 +0.6 1,724,074 - RR42_RS28365 0.34 -1.4 1,724,087 + RR42_RS28365 0.36 -0.1 1,724,087 + RR42_RS28365 0.36 -1.4 1,724,087 + RR42_RS28365 0.36 +2.7 1,724,088 - RR42_RS28365 0.36 -0.8 1,724,088 - RR42_RS28365 0.36 -2.4 1,724,091 + RR42_RS28365 0.36 +0.7 1,724,091 + RR42_RS28365 0.36 -3.0 1,724,091 + RR42_RS28365 0.36 +1.1 1,724,091 + RR42_RS28365 0.36 +2.1 1,724,091 + RR42_RS28365 0.36 +0.5 1,724,092 - RR42_RS28365 0.37 +0.9 1,724,092 - RR42_RS28365 0.37 +0.6 1,724,092 - RR42_RS28365 0.37 -1.6 1,724,108 + RR42_RS28365 0.39 +0.5 1,724,108 + RR42_RS28365 0.39 -0.6 1,724,109 - RR42_RS28365 0.39 -3.1 1,724,145 - RR42_RS28365 0.44 -2.9 1,724,274 - RR42_RS28365 0.62 +0.4 1,724,274 - RR42_RS28365 0.62 +0.1
Or see this region's nucleotide sequence