Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28100 and RR42_RS28105 overlap by 4 nucleotides RR42_RS28105 and RR42_RS28110 are separated by 32 nucleotides RR42_RS28110 and RR42_RS28115 are separated by 126 nucleotides
RR42_RS28100: RR42_RS28100 - carbon-phosphorus lyase, at 1,663,599 to 1,664,510
_RS28100
RR42_RS28105: RR42_RS28105 - phosphonate C-P lyase system protein PhnK, at 1,664,507 to 1,665,295
_RS28105
RR42_RS28110: RR42_RS28110 - phosphonate ABC transporter ATPase, at 1,665,328 to 1,666,017
_RS28110
RR42_RS28115: RR42_RS28115 - phosphonate metabolism protein PhnM, at 1,666,144 to 1,667,385
_RS28115
Position (kb) 1665
1666
1667 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1664.370 kb on + strand, within RR42_RS28100 at 1664.371 kb on - strand, within RR42_RS28100 at 1664.433 kb on + strand at 1665.313 kb on + strand at 1665.508 kb on + strand, within RR42_RS28110 at 1665.509 kb on - strand, within RR42_RS28110 at 1665.517 kb on + strand, within RR42_RS28110 at 1665.517 kb on + strand, within RR42_RS28110 at 1665.517 kb on + strand, within RR42_RS28110 at 1665.626 kb on - strand, within RR42_RS28110 at 1665.638 kb on + strand, within RR42_RS28110 at 1666.157 kb on - strand at 1666.442 kb on - strand, within RR42_RS28115 at 1666.691 kb on - strand, within RR42_RS28115 at 1666.699 kb on + strand, within RR42_RS28115 at 1666.700 kb on - strand, within RR42_RS28115 at 1666.863 kb on + strand, within RR42_RS28115 at 1666.864 kb on - strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.959 kb on - strand, within RR42_RS28115
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,664,370 + RR42_RS28100 0.85 +1.4 1,664,371 - RR42_RS28100 0.85 +0.3 1,664,433 + -0.1 1,665,313 + -1.5 1,665,508 + RR42_RS28110 0.26 +0.5 1,665,509 - RR42_RS28110 0.26 +1.9 1,665,517 + RR42_RS28110 0.27 -2.6 1,665,517 + RR42_RS28110 0.27 -1.6 1,665,517 + RR42_RS28110 0.27 -1.6 1,665,626 - RR42_RS28110 0.43 -2.0 1,665,638 + RR42_RS28110 0.45 +1.2 1,666,157 - +1.2 1,666,442 - RR42_RS28115 0.24 -1.1 1,666,691 - RR42_RS28115 0.44 +0.9 1,666,699 + RR42_RS28115 0.45 +0.8 1,666,700 - RR42_RS28115 0.45 +0.0 1,666,863 + RR42_RS28115 0.58 -0.6 1,666,864 - RR42_RS28115 0.58 +4.1 1,666,958 + RR42_RS28115 0.66 +1.1 1,666,958 + RR42_RS28115 0.66 -0.9 1,666,958 + RR42_RS28115 0.66 -0.4 1,666,958 + RR42_RS28115 0.66 -0.9 1,666,958 + RR42_RS28115 0.66 +0.6 1,666,959 - RR42_RS28115 0.66 +0.8
Or see this region's nucleotide sequence