Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27860 and RR42_RS27865 are separated by 7 nucleotides RR42_RS27865 and RR42_RS27870 are separated by 248 nucleotides
RR42_RS27860: RR42_RS27860 - ABC transporter substrate-binding protein, at 1,613,318 to 1,614,283
_RS27860
RR42_RS27865: RR42_RS27865 - transcriptional regulator, at 1,614,291 to 1,615,112
_RS27865
RR42_RS27870: RR42_RS27870 - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase, at 1,615,361 to 1,616,245
_RS27870
Position (kb) 1614
1615
1616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1613.420 kb on + strand, within RR42_RS27860 at 1613.421 kb on - strand, within RR42_RS27860 at 1613.596 kb on + strand, within RR42_RS27860 at 1613.597 kb on - strand, within RR42_RS27860 at 1613.604 kb on + strand, within RR42_RS27860 at 1613.605 kb on - strand, within RR42_RS27860 at 1613.608 kb on + strand, within RR42_RS27860 at 1613.609 kb on - strand, within RR42_RS27860 at 1613.609 kb on - strand, within RR42_RS27860 at 1613.774 kb on + strand, within RR42_RS27860 at 1613.774 kb on + strand, within RR42_RS27860 at 1613.862 kb on - strand, within RR42_RS27860 at 1614.292 kb on + strand at 1614.293 kb on - strand at 1614.293 kb on - strand at 1614.348 kb on + strand at 1614.412 kb on + strand, within RR42_RS27865 at 1614.413 kb on - strand, within RR42_RS27865 at 1614.413 kb on - strand, within RR42_RS27865 at 1614.641 kb on + strand, within RR42_RS27865 at 1614.655 kb on + strand, within RR42_RS27865 at 1614.656 kb on - strand, within RR42_RS27865 at 1614.796 kb on - strand, within RR42_RS27865 at 1614.901 kb on + strand, within RR42_RS27865 at 1614.902 kb on - strand, within RR42_RS27865 at 1614.902 kb on - strand, within RR42_RS27865 at 1615.115 kb on + strand at 1615.115 kb on + strand at 1615.116 kb on - strand at 1615.120 kb on - strand at 1615.125 kb on - strand at 1615.125 kb on - strand at 1615.158 kb on - strand at 1615.235 kb on + strand at 1615.247 kb on + strand at 1615.256 kb on + strand at 1615.256 kb on + strand at 1615.445 kb on + strand at 1615.517 kb on + strand, within RR42_RS27870 at 1615.518 kb on - strand, within RR42_RS27870 at 1615.931 kb on + strand, within RR42_RS27870 at 1615.932 kb on - strand, within RR42_RS27870 at 1615.932 kb on - strand, within RR42_RS27870 at 1616.024 kb on + strand, within RR42_RS27870 at 1616.025 kb on - strand, within RR42_RS27870
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,613,420 + RR42_RS27860 0.11 +1.1 1,613,421 - RR42_RS27860 0.11 -1.2 1,613,596 + RR42_RS27860 0.29 -3.6 1,613,597 - RR42_RS27860 0.29 -0.7 1,613,604 + RR42_RS27860 0.30 +0.4 1,613,605 - RR42_RS27860 0.30 -0.1 1,613,608 + RR42_RS27860 0.30 -1.0 1,613,609 - RR42_RS27860 0.30 +0.0 1,613,609 - RR42_RS27860 0.30 -0.2 1,613,774 + RR42_RS27860 0.47 -0.1 1,613,774 + RR42_RS27860 0.47 -0.7 1,613,862 - RR42_RS27860 0.56 -1.8 1,614,292 + -0.8 1,614,293 - -0.0 1,614,293 - +0.5 1,614,348 + -2.9 1,614,412 + RR42_RS27865 0.15 -1.3 1,614,413 - RR42_RS27865 0.15 +0.4 1,614,413 - RR42_RS27865 0.15 -0.0 1,614,641 + RR42_RS27865 0.43 -0.3 1,614,655 + RR42_RS27865 0.44 -0.4 1,614,656 - RR42_RS27865 0.44 +1.0 1,614,796 - RR42_RS27865 0.61 +0.3 1,614,901 + RR42_RS27865 0.74 +0.3 1,614,902 - RR42_RS27865 0.74 +2.9 1,614,902 - RR42_RS27865 0.74 -3.5 1,615,115 + +0.4 1,615,115 + +2.1 1,615,116 - +0.7 1,615,120 - +0.2 1,615,125 - +0.5 1,615,125 - +1.6 1,615,158 - -3.2 1,615,235 + +0.3 1,615,247 + +0.4 1,615,256 + -0.2 1,615,256 + -3.4 1,615,445 + -0.8 1,615,517 + RR42_RS27870 0.18 -0.5 1,615,518 - RR42_RS27870 0.18 -0.7 1,615,931 + RR42_RS27870 0.64 -1.4 1,615,932 - RR42_RS27870 0.65 +0.6 1,615,932 - RR42_RS27870 0.65 -1.4 1,616,024 + RR42_RS27870 0.75 -0.6 1,616,025 - RR42_RS27870 0.75 +0.8
Or see this region's nucleotide sequence