Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27150

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27140 and RR42_RS27145 are separated by 150 nucleotidesRR42_RS27145 and RR42_RS27150 are separated by 71 nucleotidesRR42_RS27150 and RR42_RS27155 are separated by 44 nucleotides RR42_RS27140: RR42_RS27140 - RND transporter, at 1,440,093 to 1,441,592 _RS27140 RR42_RS27145: RR42_RS27145 - hypothetical protein, at 1,441,743 to 1,442,276 _RS27145 RR42_RS27150: RR42_RS27150 - hemolysin D, at 1,442,348 to 1,443,460 _RS27150 RR42_RS27155: RR42_RS27155 - DSBA oxidoreductase, at 1,443,505 to 1,445,091 _RS27155 Position (kb) 1442 1443 1444Strain fitness (log2 ratio) -3 -2 -1 0 1at 1441.355 kb on + strand, within RR42_RS27140at 1441.356 kb on - strand, within RR42_RS27140at 1441.356 kb on - strand, within RR42_RS27140at 1441.356 kb on - strand, within RR42_RS27140at 1441.360 kb on - strand, within RR42_RS27140at 1441.415 kb on - strand, within RR42_RS27140at 1441.415 kb on - strand, within RR42_RS27140at 1441.415 kb on - strand, within RR42_RS27140at 1441.459 kb on - strandat 1441.660 kb on - strandat 1441.660 kb on - strandat 1441.694 kb on - strandat 1441.694 kb on - strandat 1441.842 kb on + strand, within RR42_RS27145at 1441.843 kb on - strand, within RR42_RS27145at 1441.954 kb on - strand, within RR42_RS27145at 1441.980 kb on + strand, within RR42_RS27145at 1441.980 kb on + strand, within RR42_RS27145at 1441.980 kb on + strand, within RR42_RS27145at 1442.324 kb on - strandat 1442.477 kb on + strand, within RR42_RS27150at 1442.478 kb on - strand, within RR42_RS27150at 1442.478 kb on - strand, within RR42_RS27150at 1442.478 kb on - strand, within RR42_RS27150at 1442.531 kb on + strand, within RR42_RS27150at 1442.531 kb on + strand, within RR42_RS27150at 1442.532 kb on - strand, within RR42_RS27150at 1442.576 kb on + strand, within RR42_RS27150at 1442.885 kb on + strand, within RR42_RS27150at 1443.038 kb on + strand, within RR42_RS27150at 1443.700 kb on + strand, within RR42_RS27155at 1443.700 kb on + strand, within RR42_RS27155at 1443.700 kb on + strand, within RR42_RS27155at 1443.701 kb on - strand, within RR42_RS27155at 1443.701 kb on - strand, within RR42_RS27155at 1443.701 kb on - strand, within RR42_RS27155at 1443.795 kb on + strand, within RR42_RS27155at 1443.795 kb on + strand, within RR42_RS27155at 1444.021 kb on + strand, within RR42_RS27155at 1444.021 kb on + strand, within RR42_RS27155at 1444.021 kb on + strand, within RR42_RS27155at 1444.022 kb on - strand, within RR42_RS27155at 1444.138 kb on + strand, within RR42_RS27155at 1444.139 kb on - strand, within RR42_RS27155at 1444.184 kb on - strand, within RR42_RS27155at 1444.184 kb on - strand, within RR42_RS27155at 1444.294 kb on + strand, within RR42_RS27155at 1444.294 kb on + strand, within RR42_RS27155at 1444.295 kb on - strand, within RR42_RS27155at 1444.396 kb on + strand, within RR42_RS27155at 1444.396 kb on + strand, within RR42_RS27155

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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1,441,355 + RR42_RS27140 0.84 +1.0
1,441,356 - RR42_RS27140 0.84 -1.6
1,441,356 - RR42_RS27140 0.84 -0.3
1,441,356 - RR42_RS27140 0.84 +0.5
1,441,360 - RR42_RS27140 0.84 -1.1
1,441,415 - RR42_RS27140 0.88 +0.7
1,441,415 - RR42_RS27140 0.88 -2.3
1,441,415 - RR42_RS27140 0.88 +0.3
1,441,459 - +0.5
1,441,660 - -1.8
1,441,660 - +0.2
1,441,694 - +0.8
1,441,694 - +1.0
1,441,842 + RR42_RS27145 0.19 -0.0
1,441,843 - RR42_RS27145 0.19 +0.8
1,441,954 - RR42_RS27145 0.40 +0.6
1,441,980 + RR42_RS27145 0.44 +1.3
1,441,980 + RR42_RS27145 0.44 -2.4
1,441,980 + RR42_RS27145 0.44 +0.1
1,442,324 - -2.7
1,442,477 + RR42_RS27150 0.12 -0.5
1,442,478 - RR42_RS27150 0.12 +0.5
1,442,478 - RR42_RS27150 0.12 -0.9
1,442,478 - RR42_RS27150 0.12 -1.0
1,442,531 + RR42_RS27150 0.16 -1.1
1,442,531 + RR42_RS27150 0.16 -0.4
1,442,532 - RR42_RS27150 0.17 -0.6
1,442,576 + RR42_RS27150 0.20 -0.1
1,442,885 + RR42_RS27150 0.48 -1.7
1,443,038 + RR42_RS27150 0.62 +0.8
1,443,700 + RR42_RS27155 0.12 +0.4
1,443,700 + RR42_RS27155 0.12 -2.4
1,443,700 + RR42_RS27155 0.12 +0.3
1,443,701 - RR42_RS27155 0.12 -0.1
1,443,701 - RR42_RS27155 0.12 -1.3
1,443,701 - RR42_RS27155 0.12 +0.4
1,443,795 + RR42_RS27155 0.18 +0.7
1,443,795 + RR42_RS27155 0.18 +1.7
1,444,021 + RR42_RS27155 0.33 -2.4
1,444,021 + RR42_RS27155 0.33 -3.1
1,444,021 + RR42_RS27155 0.33 -2.3
1,444,022 - RR42_RS27155 0.33 +0.2
1,444,138 + RR42_RS27155 0.40 +0.7
1,444,139 - RR42_RS27155 0.40 +0.8
1,444,184 - RR42_RS27155 0.43 -0.1
1,444,184 - RR42_RS27155 0.43 +0.9
1,444,294 + RR42_RS27155 0.50 -1.3
1,444,294 + RR42_RS27155 0.50 -0.9
1,444,295 - RR42_RS27155 0.50 -0.0
1,444,396 + RR42_RS27155 0.56 -0.5
1,444,396 + RR42_RS27155 0.56 +1.4

Or see this region's nucleotide sequence