Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25470 and RR42_RS25475 overlap by 4 nucleotides RR42_RS25475 and RR42_RS25480 are separated by 11 nucleotides RR42_RS25480 and RR42_RS25485 are separated by 16 nucleotides RR42_RS25485 and RR42_RS25490 are separated by 30 nucleotides
RR42_RS25470: RR42_RS25470 - alpha/beta hydrolase, at 1,061,322 to 1,062,113
_RS25470
RR42_RS25475: RR42_RS25475 - peptidase S15, at 1,062,110 to 1,063,024
_RS25475
RR42_RS25480: RR42_RS25480 - enoyl-CoA hydratase, at 1,063,036 to 1,063,845
_RS25480
RR42_RS25485: RR42_RS25485 - hypothetical protein, at 1,063,862 to 1,064,335
_RS25485
RR42_RS25490: RR42_RS25490 - ABC transporter substrate-binding protein, at 1,064,366 to 1,065,352
_RS25490
Position (kb) 1063
1064 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1062.042 kb on + strand at 1062.047 kb on - strand at 1062.103 kb on - strand at 1062.113 kb on + strand at 1062.113 kb on + strand at 1062.145 kb on - strand at 1062.351 kb on + strand, within RR42_RS25475 at 1062.351 kb on + strand, within RR42_RS25475 at 1062.351 kb on + strand, within RR42_RS25475 at 1062.351 kb on + strand, within RR42_RS25475 at 1062.352 kb on - strand, within RR42_RS25475 at 1062.457 kb on - strand, within RR42_RS25475 at 1062.632 kb on + strand, within RR42_RS25475 at 1062.684 kb on + strand, within RR42_RS25475 at 1062.685 kb on - strand, within RR42_RS25475 at 1062.742 kb on - strand, within RR42_RS25475 at 1062.894 kb on + strand, within RR42_RS25475 at 1062.894 kb on + strand, within RR42_RS25475 at 1063.005 kb on + strand at 1063.005 kb on + strand at 1063.005 kb on + strand at 1063.006 kb on - strand at 1063.006 kb on - strand at 1063.402 kb on + strand, within RR42_RS25480 at 1063.444 kb on - strand, within RR42_RS25480 at 1063.515 kb on - strand, within RR42_RS25480 at 1063.739 kb on + strand, within RR42_RS25480 at 1063.740 kb on - strand, within RR42_RS25480 at 1063.894 kb on + strand at 1064.066 kb on + strand, within RR42_RS25485 at 1064.067 kb on - strand, within RR42_RS25485 at 1064.074 kb on + strand, within RR42_RS25485 at 1064.075 kb on - strand, within RR42_RS25485 at 1064.082 kb on + strand, within RR42_RS25485 at 1064.196 kb on + strand, within RR42_RS25485 at 1064.196 kb on + strand, within RR42_RS25485 at 1064.259 kb on + strand, within RR42_RS25485 at 1064.259 kb on + strand, within RR42_RS25485 at 1064.259 kb on + strand, within RR42_RS25485 at 1064.259 kb on + strand, within RR42_RS25485 at 1064.260 kb on - strand, within RR42_RS25485 at 1064.260 kb on - strand, within RR42_RS25485 at 1064.260 kb on - strand, within RR42_RS25485 at 1064.278 kb on + strand, within RR42_RS25485 at 1064.394 kb on - strand at 1064.428 kb on - strand at 1064.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,062,042 + -1.2 1,062,047 - -0.1 1,062,103 - +1.7 1,062,113 + -1.7 1,062,113 + -3.3 1,062,145 - +0.1 1,062,351 + RR42_RS25475 0.26 -1.1 1,062,351 + RR42_RS25475 0.26 +0.7 1,062,351 + RR42_RS25475 0.26 -0.1 1,062,351 + RR42_RS25475 0.26 -1.4 1,062,352 - RR42_RS25475 0.26 +1.9 1,062,457 - RR42_RS25475 0.38 +1.5 1,062,632 + RR42_RS25475 0.57 -0.2 1,062,684 + RR42_RS25475 0.63 -1.0 1,062,685 - RR42_RS25475 0.63 -0.2 1,062,742 - RR42_RS25475 0.69 +1.1 1,062,894 + RR42_RS25475 0.86 -0.5 1,062,894 + RR42_RS25475 0.86 -4.4 1,063,005 + +0.7 1,063,005 + -0.2 1,063,005 + -0.1 1,063,006 - -2.0 1,063,006 - -1.4 1,063,402 + RR42_RS25480 0.45 +1.3 1,063,444 - RR42_RS25480 0.50 +0.8 1,063,515 - RR42_RS25480 0.59 -0.9 1,063,739 + RR42_RS25480 0.87 -0.1 1,063,740 - RR42_RS25480 0.87 +1.1 1,063,894 + +0.4 1,064,066 + RR42_RS25485 0.43 -0.4 1,064,067 - RR42_RS25485 0.43 -1.2 1,064,074 + RR42_RS25485 0.45 +0.1 1,064,075 - RR42_RS25485 0.45 -0.7 1,064,082 + RR42_RS25485 0.46 +0.4 1,064,196 + RR42_RS25485 0.70 -0.3 1,064,196 + RR42_RS25485 0.70 +1.6 1,064,259 + RR42_RS25485 0.84 -3.2 1,064,259 + RR42_RS25485 0.84 +0.5 1,064,259 + RR42_RS25485 0.84 +0.3 1,064,259 + RR42_RS25485 0.84 +2.7 1,064,260 - RR42_RS25485 0.84 -2.4 1,064,260 - RR42_RS25485 0.84 -1.0 1,064,260 - RR42_RS25485 0.84 -0.9 1,064,278 + RR42_RS25485 0.88 +0.1 1,064,394 - +0.7 1,064,428 - -0.9 1,064,458 - -0.0
Or see this region's nucleotide sequence