Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24775 and RR42_RS24780 are separated by 160 nucleotides RR42_RS24780 and RR42_RS24785 are separated by 74 nucleotides
RR42_RS24775: RR42_RS24775 - transcriptional regulator, at 896,705 to 897,655
_RS24775
RR42_RS24780: RR42_RS24780 - alpha/beta hydrolase, at 897,816 to 898,736
_RS24780
RR42_RS24785: RR42_RS24785 - NAD-dependent dehydratase, at 898,811 to 899,458
_RS24785
Position (kb) 897
898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 896.827 kb on - strand, within RR42_RS24775 at 896.827 kb on - strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.831 kb on - strand, within RR42_RS24775 at 896.831 kb on - strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.833 kb on - strand, within RR42_RS24775 at 896.833 kb on - strand, within RR42_RS24775 at 896.917 kb on + strand, within RR42_RS24775 at 896.943 kb on - strand, within RR42_RS24775 at 896.943 kb on - strand, within RR42_RS24775 at 896.977 kb on + strand, within RR42_RS24775 at 897.136 kb on - strand, within RR42_RS24775 at 897.358 kb on + strand, within RR42_RS24775 at 897.358 kb on + strand, within RR42_RS24775 at 897.359 kb on - strand, within RR42_RS24775 at 897.359 kb on - strand, within RR42_RS24775 at 897.501 kb on + strand, within RR42_RS24775 at 897.502 kb on - strand, within RR42_RS24775 at 897.675 kb on + strand at 897.702 kb on + strand at 897.706 kb on + strand at 897.706 kb on + strand at 897.720 kb on + strand at 897.729 kb on + strand at 897.729 kb on + strand at 897.729 kb on + strand at 897.730 kb on - strand at 897.730 kb on - strand at 897.730 kb on - strand at 897.730 kb on - strand at 897.843 kb on + strand at 897.843 kb on + strand at 897.844 kb on - strand at 897.844 kb on - strand at 897.868 kb on - strand at 898.098 kb on + strand, within RR42_RS24780 at 898.099 kb on - strand, within RR42_RS24780 at 898.116 kb on + strand, within RR42_RS24780 at 898.218 kb on - strand, within RR42_RS24780 at 898.218 kb on - strand, within RR42_RS24780 at 898.233 kb on + strand, within RR42_RS24780 at 898.233 kb on + strand, within RR42_RS24780 at 898.234 kb on - strand, within RR42_RS24780 at 898.402 kb on + strand, within RR42_RS24780 at 898.403 kb on - strand, within RR42_RS24780 at 898.660 kb on - strand at 898.660 kb on - strand at 898.719 kb on + strand at 898.719 kb on + strand at 898.720 kb on - strand at 898.720 kb on - strand at 898.720 kb on - strand at 898.720 kb on - strand at 898.735 kb on - strand at 898.833 kb on + strand at 898.833 kb on + strand at 898.834 kb on - strand at 898.834 kb on - strand at 898.875 kb on + strand at 898.875 kb on + strand at 899.011 kb on + strand, within RR42_RS24785 at 899.012 kb on - strand, within RR42_RS24785 at 899.033 kb on + strand, within RR42_RS24785 at 899.193 kb on - strand, within RR42_RS24785 at 899.193 kb on - strand, within RR42_RS24785 at 899.246 kb on + strand, within RR42_RS24785 at 899.246 kb on + strand, within RR42_RS24785 at 899.295 kb on - strand, within RR42_RS24785 at 899.429 kb on - strand at 899.472 kb on + strand at 899.472 kb on + strand at 899.472 kb on + strand at 899.473 kb on - strand at 899.536 kb on + strand at 899.536 kb on + strand at 899.536 kb on + strand at 899.536 kb on + strand at 899.537 kb on - strand at 899.559 kb on + strand at 899.559 kb on + strand at 899.559 kb on + strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.655 kb on + strand at 899.655 kb on + strand at 899.656 kb on - strand at 899.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 896,827 - RR42_RS24775 0.13 -1.0 896,827 - RR42_RS24775 0.13 +0.3 896,830 + RR42_RS24775 0.13 +0.9 896,830 + RR42_RS24775 0.13 +0.8 896,830 + RR42_RS24775 0.13 +0.4 896,830 + RR42_RS24775 0.13 -2.2 896,831 - RR42_RS24775 0.13 -0.4 896,831 - RR42_RS24775 0.13 -0.6 896,832 + RR42_RS24775 0.13 -0.0 896,832 + RR42_RS24775 0.13 -0.2 896,832 + RR42_RS24775 0.13 +1.2 896,833 - RR42_RS24775 0.13 +0.0 896,833 - RR42_RS24775 0.13 +0.6 896,917 + RR42_RS24775 0.22 -0.4 896,943 - RR42_RS24775 0.25 +0.9 896,943 - RR42_RS24775 0.25 +0.7 896,977 + RR42_RS24775 0.29 +0.4 897,136 - RR42_RS24775 0.45 -2.6 897,358 + RR42_RS24775 0.69 +0.5 897,358 + RR42_RS24775 0.69 +0.7 897,359 - RR42_RS24775 0.69 +0.1 897,359 - RR42_RS24775 0.69 +0.2 897,501 + RR42_RS24775 0.84 -0.6 897,502 - RR42_RS24775 0.84 -1.1 897,675 + -0.3 897,702 + +1.5 897,706 + -0.6 897,706 + +0.2 897,720 + -2.8 897,729 + +1.3 897,729 + +0.2 897,729 + +1.7 897,730 - -0.3 897,730 - +0.1 897,730 - -1.1 897,730 - -0.6 897,843 + +0.1 897,843 + -0.4 897,844 - -0.6 897,844 - +1.8 897,868 - +0.0 898,098 + RR42_RS24780 0.31 +0.6 898,099 - RR42_RS24780 0.31 -0.7 898,116 + RR42_RS24780 0.33 +1.0 898,218 - RR42_RS24780 0.44 +0.0 898,218 - RR42_RS24780 0.44 +0.5 898,233 + RR42_RS24780 0.45 -2.8 898,233 + RR42_RS24780 0.45 +1.8 898,234 - RR42_RS24780 0.45 +0.5 898,402 + RR42_RS24780 0.64 +0.7 898,403 - RR42_RS24780 0.64 +0.3 898,660 - +1.4 898,660 - +0.2 898,719 + -2.5 898,719 + +0.5 898,720 - -0.6 898,720 - -0.4 898,720 - -2.8 898,720 - +0.2 898,735 - +0.7 898,833 + +0.6 898,833 + +0.7 898,834 - -1.4 898,834 - +1.2 898,875 + -0.8 898,875 + -0.4 899,011 + RR42_RS24785 0.31 +0.7 899,012 - RR42_RS24785 0.31 -0.8 899,033 + RR42_RS24785 0.34 +1.3 899,193 - RR42_RS24785 0.59 -2.2 899,193 - RR42_RS24785 0.59 +1.4 899,246 + RR42_RS24785 0.67 +0.4 899,246 + RR42_RS24785 0.67 +0.7 899,295 - RR42_RS24785 0.75 +0.4 899,429 - +0.7 899,472 + +0.6 899,472 + -0.1 899,472 + -0.9 899,473 - -1.1 899,536 + -0.1 899,536 + -0.7 899,536 + +1.5 899,536 + +0.8 899,537 - -3.5 899,559 + -3.1 899,559 + +2.8 899,559 + +0.8 899,560 - -0.7 899,560 - +0.7 899,560 - -1.3 899,560 - -0.6 899,560 - -0.9 899,560 - +1.0 899,655 + -0.6 899,655 + +0.9 899,656 - +1.9 899,656 - -2.3
Or see this region's nucleotide sequence