Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24660

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24650 and RR42_RS24655 are separated by 64 nucleotidesRR42_RS24655 and RR42_RS24660 are separated by 214 nucleotidesRR42_RS24660 and RR42_RS24665 overlap by 4 nucleotides RR42_RS24650: RR42_RS24650 - membrane protein, at 867,107 to 867,796 _RS24650 RR42_RS24655: RR42_RS24655 - TetR family transcriptional regulator, at 867,861 to 868,562 _RS24655 RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884 _RS24660 RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990 _RS24665 Position (kb) 868 869 870 871 872Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 867.811 kb on + strandat 867.812 kb on - strandat 867.824 kb on - strandat 867.979 kb on - strand, within RR42_RS24655at 868.038 kb on + strand, within RR42_RS24655at 868.038 kb on + strand, within RR42_RS24655at 868.039 kb on - strand, within RR42_RS24655at 868.044 kb on + strand, within RR42_RS24655at 868.045 kb on - strand, within RR42_RS24655at 868.045 kb on - strand, within RR42_RS24655at 868.131 kb on - strand, within RR42_RS24655at 868.267 kb on - strand, within RR42_RS24655at 868.285 kb on + strand, within RR42_RS24655at 868.285 kb on + strand, within RR42_RS24655at 868.285 kb on + strand, within RR42_RS24655at 868.286 kb on - strand, within RR42_RS24655at 868.427 kb on + strand, within RR42_RS24655at 868.428 kb on - strand, within RR42_RS24655at 868.429 kb on + strand, within RR42_RS24655at 868.429 kb on + strand, within RR42_RS24655at 868.429 kb on + strand, within RR42_RS24655at 868.429 kb on + strand, within RR42_RS24655at 868.430 kb on - strand, within RR42_RS24655at 868.430 kb on - strand, within RR42_RS24655at 868.430 kb on - strand, within RR42_RS24655at 868.524 kb on + strandat 868.525 kb on + strandat 868.525 kb on + strandat 868.525 kb on + strandat 868.525 kb on + strandat 868.526 kb on - strandat 868.526 kb on - strandat 868.526 kb on - strandat 868.526 kb on - strandat 868.548 kb on - strandat 868.548 kb on - strandat 868.548 kb on - strandat 868.569 kb on + strandat 868.594 kb on - strandat 868.604 kb on + strandat 869.038 kb on + strandat 869.038 kb on + strandat 869.039 kb on - strandat 869.300 kb on + strand, within RR42_RS24660at 869.300 kb on + strand, within RR42_RS24660at 869.301 kb on - strand, within RR42_RS24660at 869.364 kb on - strand, within RR42_RS24660at 869.436 kb on + strand, within RR42_RS24660at 869.437 kb on - strand, within RR42_RS24660at 869.437 kb on - strand, within RR42_RS24660at 869.460 kb on + strand, within RR42_RS24660at 869.460 kb on + strand, within RR42_RS24660at 869.563 kb on + strand, within RR42_RS24660at 869.564 kb on - strand, within RR42_RS24660at 869.877 kb on - strand, within RR42_RS24660at 870.020 kb on + strand, within RR42_RS24660at 870.020 kb on + strand, within RR42_RS24660at 870.089 kb on + strand, within RR42_RS24660at 870.089 kb on + strand, within RR42_RS24660at 870.213 kb on - strand, within RR42_RS24660at 870.213 kb on - strand, within RR42_RS24660at 870.280 kb on - strand, within RR42_RS24660at 870.357 kb on - strand, within RR42_RS24660at 870.414 kb on - strand, within RR42_RS24660at 870.417 kb on - strand, within RR42_RS24660at 870.417 kb on - strand, within RR42_RS24660at 870.501 kb on - strand, within RR42_RS24660at 870.679 kb on + strand, within RR42_RS24660at 870.680 kb on - strand, within RR42_RS24660at 870.721 kb on - strand, within RR42_RS24660at 870.721 kb on - strand, within RR42_RS24660at 870.721 kb on - strand, within RR42_RS24660at 870.721 kb on - strand, within RR42_RS24660at 871.049 kb on + strand, within RR42_RS24660at 871.049 kb on + strand, within RR42_RS24660at 871.050 kb on - strand, within RR42_RS24660at 871.091 kb on - strand, within RR42_RS24660at 871.252 kb on + strand, within RR42_RS24660at 871.253 kb on - strand, within RR42_RS24660at 871.331 kb on + strand, within RR42_RS24660at 871.334 kb on + strand, within RR42_RS24660at 871.375 kb on + strand, within RR42_RS24660at 871.376 kb on - strand, within RR42_RS24660at 871.376 kb on - strand, within RR42_RS24660at 871.391 kb on + strand, within RR42_RS24660at 871.392 kb on - strand, within RR42_RS24660at 871.392 kb on - strand, within RR42_RS24660at 871.392 kb on - strand, within RR42_RS24660at 871.697 kb on - strandat 871.795 kb on + strandat 871.854 kb on + strandat 871.904 kb on + strandat 871.905 kb on - strandat 872.088 kb on + strand, within RR42_RS24665at 872.099 kb on + strand, within RR42_RS24665

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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867,811 + +0.7
867,812 - +0.9
867,824 - +0.8
867,979 - RR42_RS24655 0.17 -1.1
868,038 + RR42_RS24655 0.25 +1.4
868,038 + RR42_RS24655 0.25 +0.8
868,039 - RR42_RS24655 0.25 +2.5
868,044 + RR42_RS24655 0.26 -0.4
868,045 - RR42_RS24655 0.26 +0.8
868,045 - RR42_RS24655 0.26 -0.7
868,131 - RR42_RS24655 0.38 -1.8
868,267 - RR42_RS24655 0.58 +1.3
868,285 + RR42_RS24655 0.60 +0.2
868,285 + RR42_RS24655 0.60 +0.9
868,285 + RR42_RS24655 0.60 -0.1
868,286 - RR42_RS24655 0.61 -1.4
868,427 + RR42_RS24655 0.81 +0.6
868,428 - RR42_RS24655 0.81 -3.8
868,429 + RR42_RS24655 0.81 -2.0
868,429 + RR42_RS24655 0.81 -0.4
868,429 + RR42_RS24655 0.81 -0.7
868,429 + RR42_RS24655 0.81 +1.9
868,430 - RR42_RS24655 0.81 +1.0
868,430 - RR42_RS24655 0.81 +0.2
868,430 - RR42_RS24655 0.81 +1.2
868,524 + +0.1
868,525 + +1.2
868,525 + +0.1
868,525 + -2.3
868,525 + +0.1
868,526 - -0.6
868,526 - -0.4
868,526 - +1.3
868,526 - +0.0
868,548 - -0.7
868,548 - +1.1
868,548 - -0.4
868,569 + +1.3
868,594 - -0.6
868,604 + +0.2
869,038 + -0.4
869,038 + +0.6
869,039 - -0.1
869,300 + RR42_RS24660 0.17 -1.1
869,300 + RR42_RS24660 0.17 +0.9
869,301 - RR42_RS24660 0.17 +1.2
869,364 - RR42_RS24660 0.19 +1.9
869,436 + RR42_RS24660 0.21 -1.4
869,437 - RR42_RS24660 0.21 +0.8
869,437 - RR42_RS24660 0.21 +0.8
869,460 + RR42_RS24660 0.22 +0.3
869,460 + RR42_RS24660 0.22 +0.0
869,563 + RR42_RS24660 0.25 -2.8
869,564 - RR42_RS24660 0.25 +0.6
869,877 - RR42_RS24660 0.35 -2.0
870,020 + RR42_RS24660 0.40 +1.6
870,020 + RR42_RS24660 0.40 +0.4
870,089 + RR42_RS24660 0.42 -0.5
870,089 + RR42_RS24660 0.42 +1.3
870,213 - RR42_RS24660 0.46 -0.4
870,213 - RR42_RS24660 0.46 -1.6
870,280 - RR42_RS24660 0.48 +0.0
870,357 - RR42_RS24660 0.51 +1.1
870,414 - RR42_RS24660 0.53 +0.2
870,417 - RR42_RS24660 0.53 -0.4
870,417 - RR42_RS24660 0.53 +1.0
870,501 - RR42_RS24660 0.55 +0.4
870,679 + RR42_RS24660 0.61 +0.2
870,680 - RR42_RS24660 0.61 +1.4
870,721 - RR42_RS24660 0.63 -0.6
870,721 - RR42_RS24660 0.63 -1.4
870,721 - RR42_RS24660 0.63 -0.6
870,721 - RR42_RS24660 0.63 -3.8
871,049 + RR42_RS24660 0.73 -0.0
871,049 + RR42_RS24660 0.73 -0.1
871,050 - RR42_RS24660 0.73 -2.5
871,091 - RR42_RS24660 0.74 +0.6
871,252 + RR42_RS24660 0.80 -0.8
871,253 - RR42_RS24660 0.80 -0.2
871,331 + RR42_RS24660 0.82 +0.5
871,334 + RR42_RS24660 0.82 -1.4
871,375 + RR42_RS24660 0.84 -0.8
871,376 - RR42_RS24660 0.84 +0.2
871,376 - RR42_RS24660 0.84 -2.4
871,391 + RR42_RS24660 0.84 -3.1
871,392 - RR42_RS24660 0.84 +0.5
871,392 - RR42_RS24660 0.84 +1.4
871,392 - RR42_RS24660 0.84 -0.6
871,697 - -1.6
871,795 + -1.8
871,854 + -0.6
871,904 + +0.4
871,905 - -3.1
872,088 + RR42_RS24665 0.19 +1.2
872,099 + RR42_RS24665 0.20 +1.2

Or see this region's nucleotide sequence