Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24645 and RR42_RS24650 are separated by 245 nucleotides RR42_RS24650 and RR42_RS24655 are separated by 64 nucleotides RR42_RS24655 and RR42_RS24660 are separated by 214 nucleotides
RR42_RS24645: RR42_RS24645 - hypothetical protein, at 866,181 to 866,861
_RS24645
RR42_RS24650: RR42_RS24650 - membrane protein, at 867,107 to 867,796
_RS24650
RR42_RS24655: RR42_RS24655 - TetR family transcriptional regulator, at 867,861 to 868,562
_RS24655
RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884
_RS24660
Position (kb) 867
868
869 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 866.968 kb on - strand at 866.968 kb on - strand at 866.986 kb on + strand at 867.037 kb on + strand at 867.170 kb on + strand at 867.170 kb on + strand at 867.170 kb on + strand at 867.244 kb on + strand, within RR42_RS24650 at 867.247 kb on + strand, within RR42_RS24650 at 867.284 kb on + strand, within RR42_RS24650 at 867.285 kb on - strand, within RR42_RS24650 at 867.331 kb on - strand, within RR42_RS24650 at 867.337 kb on + strand, within RR42_RS24650 at 867.337 kb on + strand, within RR42_RS24650 at 867.404 kb on + strand, within RR42_RS24650 at 867.404 kb on + strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.405 kb on - strand, within RR42_RS24650 at 867.455 kb on - strand, within RR42_RS24650 at 867.473 kb on + strand, within RR42_RS24650 at 867.479 kb on + strand, within RR42_RS24650 at 867.479 kb on + strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.519 kb on - strand, within RR42_RS24650 at 867.620 kb on + strand, within RR42_RS24650 at 867.625 kb on + strand, within RR42_RS24650 at 867.762 kb on - strand at 867.762 kb on - strand at 867.811 kb on + strand at 867.812 kb on - strand at 867.824 kb on - strand at 867.979 kb on - strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.038 kb on + strand, within RR42_RS24655 at 868.039 kb on - strand, within RR42_RS24655 at 868.044 kb on + strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.045 kb on - strand, within RR42_RS24655 at 868.131 kb on - strand, within RR42_RS24655 at 868.267 kb on - strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.285 kb on + strand, within RR42_RS24655 at 868.286 kb on - strand, within RR42_RS24655 at 868.427 kb on + strand, within RR42_RS24655 at 868.428 kb on - strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.429 kb on + strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.430 kb on - strand, within RR42_RS24655 at 868.524 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.525 kb on + strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.526 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.548 kb on - strand at 868.569 kb on + strand at 868.594 kb on - strand at 868.604 kb on + strand at 869.038 kb on + strand at 869.038 kb on + strand at 869.039 kb on - strand at 869.300 kb on + strand, within RR42_RS24660 at 869.300 kb on + strand, within RR42_RS24660 at 869.301 kb on - strand, within RR42_RS24660 at 869.364 kb on - strand, within RR42_RS24660 at 869.436 kb on + strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.437 kb on - strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660 at 869.460 kb on + strand, within RR42_RS24660
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 866,968 - -0.0 866,968 - +0.3 866,986 + -0.4 867,037 + +1.0 867,170 + -0.3 867,170 + -1.5 867,170 + +1.1 867,244 + RR42_RS24650 0.20 -0.3 867,247 + RR42_RS24650 0.20 -0.7 867,284 + RR42_RS24650 0.26 +0.7 867,285 - RR42_RS24650 0.26 -2.4 867,331 - RR42_RS24650 0.32 -1.0 867,337 + RR42_RS24650 0.33 +2.6 867,337 + RR42_RS24650 0.33 +0.8 867,404 + RR42_RS24650 0.43 +2.2 867,404 + RR42_RS24650 0.43 -1.2 867,405 - RR42_RS24650 0.43 -0.0 867,405 - RR42_RS24650 0.43 +0.4 867,405 - RR42_RS24650 0.43 -1.4 867,405 - RR42_RS24650 0.43 -2.7 867,405 - RR42_RS24650 0.43 +0.0 867,405 - RR42_RS24650 0.43 -0.2 867,455 - RR42_RS24650 0.50 +0.5 867,473 + RR42_RS24650 0.53 +1.6 867,479 + RR42_RS24650 0.54 -0.9 867,479 + RR42_RS24650 0.54 +0.7 867,519 - RR42_RS24650 0.60 +0.0 867,519 - RR42_RS24650 0.60 +0.0 867,519 - RR42_RS24650 0.60 +0.7 867,620 + RR42_RS24650 0.74 +0.4 867,625 + RR42_RS24650 0.75 -0.5 867,762 - +0.7 867,762 - +1.2 867,811 + +0.7 867,812 - +0.9 867,824 - +0.8 867,979 - RR42_RS24655 0.17 -1.1 868,038 + RR42_RS24655 0.25 +1.4 868,038 + RR42_RS24655 0.25 +0.8 868,039 - RR42_RS24655 0.25 +2.5 868,044 + RR42_RS24655 0.26 -0.4 868,045 - RR42_RS24655 0.26 +0.8 868,045 - RR42_RS24655 0.26 -0.7 868,131 - RR42_RS24655 0.38 -1.8 868,267 - RR42_RS24655 0.58 +1.3 868,285 + RR42_RS24655 0.60 +0.2 868,285 + RR42_RS24655 0.60 +0.9 868,285 + RR42_RS24655 0.60 -0.1 868,286 - RR42_RS24655 0.61 -1.4 868,427 + RR42_RS24655 0.81 +0.6 868,428 - RR42_RS24655 0.81 -3.8 868,429 + RR42_RS24655 0.81 -2.0 868,429 + RR42_RS24655 0.81 -0.4 868,429 + RR42_RS24655 0.81 -0.7 868,429 + RR42_RS24655 0.81 +1.9 868,430 - RR42_RS24655 0.81 +1.0 868,430 - RR42_RS24655 0.81 +0.2 868,430 - RR42_RS24655 0.81 +1.2 868,524 + +0.1 868,525 + +1.2 868,525 + +0.1 868,525 + -2.3 868,525 + +0.1 868,526 - -0.6 868,526 - -0.4 868,526 - +1.3 868,526 - +0.0 868,548 - -0.7 868,548 - +1.1 868,548 - -0.4 868,569 + +1.3 868,594 - -0.6 868,604 + +0.2 869,038 + -0.4 869,038 + +0.6 869,039 - -0.1 869,300 + RR42_RS24660 0.17 -1.1 869,300 + RR42_RS24660 0.17 +0.9 869,301 - RR42_RS24660 0.17 +1.2 869,364 - RR42_RS24660 0.19 +1.9 869,436 + RR42_RS24660 0.21 -1.4 869,437 - RR42_RS24660 0.21 +0.8 869,437 - RR42_RS24660 0.21 +0.8 869,460 + RR42_RS24660 0.22 +0.3 869,460 + RR42_RS24660 0.22 +0.0
Or see this region's nucleotide sequence