Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24080 and RR42_RS24085 are separated by 161 nucleotides RR42_RS24085 and RR42_RS24090 are separated by 111 nucleotides
RR42_RS24080: RR42_RS24080 - hypothetical protein, at 727,358 to 728,245
_RS24080
RR42_RS24085: RR42_RS24085 - hypothetical protein, at 728,407 to 729,375
_RS24085
RR42_RS24090: RR42_RS24090 - quinone oxidoreductase, at 729,487 to 730,479
_RS24090
Position (kb) 728
729
730 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 727.415 kb on + strand at 727.416 kb on - strand at 727.416 kb on - strand at 727.613 kb on + strand, within RR42_RS24080 at 727.613 kb on + strand, within RR42_RS24080 at 727.828 kb on + strand, within RR42_RS24080 at 727.835 kb on + strand, within RR42_RS24080 at 727.836 kb on - strand, within RR42_RS24080 at 727.933 kb on + strand, within RR42_RS24080 at 727.934 kb on - strand, within RR42_RS24080 at 727.958 kb on - strand, within RR42_RS24080 at 728.036 kb on - strand, within RR42_RS24080 at 728.036 kb on - strand, within RR42_RS24080 at 728.202 kb on + strand at 728.203 kb on - strand at 728.203 kb on - strand at 728.262 kb on + strand at 728.352 kb on + strand at 728.352 kb on + strand at 728.352 kb on + strand at 728.353 kb on - strand at 728.353 kb on - strand at 728.353 kb on - strand at 728.353 kb on - strand at 728.356 kb on + strand at 728.357 kb on - strand at 728.379 kb on + strand at 728.380 kb on - strand at 728.423 kb on + strand at 728.424 kb on - strand at 728.431 kb on - strand at 728.431 kb on - strand at 728.431 kb on - strand at 728.442 kb on + strand at 728.442 kb on + strand at 728.442 kb on + strand at 728.442 kb on + strand at 728.443 kb on - strand at 728.443 kb on - strand at 728.494 kb on - strand at 728.659 kb on + strand, within RR42_RS24085 at 728.659 kb on + strand, within RR42_RS24085 at 728.660 kb on - strand, within RR42_RS24085 at 728.662 kb on - strand, within RR42_RS24085 at 728.708 kb on + strand, within RR42_RS24085 at 728.709 kb on - strand, within RR42_RS24085 at 728.709 kb on - strand, within RR42_RS24085 at 728.709 kb on - strand, within RR42_RS24085 at 728.711 kb on - strand, within RR42_RS24085 at 728.711 kb on - strand, within RR42_RS24085 at 728.711 kb on - strand, within RR42_RS24085 at 728.713 kb on - strand, within RR42_RS24085 at 728.786 kb on + strand, within RR42_RS24085 at 728.817 kb on + strand, within RR42_RS24085 at 728.818 kb on - strand, within RR42_RS24085 at 728.864 kb on - strand, within RR42_RS24085 at 728.937 kb on + strand, within RR42_RS24085 at 728.950 kb on + strand, within RR42_RS24085 at 729.023 kb on + strand, within RR42_RS24085 at 729.024 kb on - strand, within RR42_RS24085 at 729.078 kb on + strand, within RR42_RS24085 at 729.078 kb on + strand, within RR42_RS24085 at 729.078 kb on + strand, within RR42_RS24085 at 729.079 kb on - strand, within RR42_RS24085 at 729.104 kb on + strand, within RR42_RS24085 at 729.105 kb on - strand, within RR42_RS24085 at 729.105 kb on - strand, within RR42_RS24085 at 729.105 kb on - strand, within RR42_RS24085 at 729.154 kb on + strand, within RR42_RS24085 at 729.154 kb on + strand, within RR42_RS24085 at 729.155 kb on - strand, within RR42_RS24085 at 729.253 kb on + strand, within RR42_RS24085 at 729.254 kb on - strand, within RR42_RS24085 at 729.254 kb on - strand, within RR42_RS24085 at 729.312 kb on + strand at 729.313 kb on - strand at 729.313 kb on - strand at 729.333 kb on + strand at 729.431 kb on + strand at 729.432 kb on - strand at 729.432 kb on - strand at 729.432 kb on - strand at 729.484 kb on - strand at 729.495 kb on + strand at 729.495 kb on + strand at 729.496 kb on - strand at 729.512 kb on - strand at 729.512 kb on - strand at 729.584 kb on + strand at 729.585 kb on - strand at 729.585 kb on - strand at 729.585 kb on - strand at 729.585 kb on - strand at 729.640 kb on + strand, within RR42_RS24090 at 729.641 kb on - strand, within RR42_RS24090 at 729.654 kb on + strand, within RR42_RS24090 at 729.658 kb on + strand, within RR42_RS24090 at 729.658 kb on + strand, within RR42_RS24090 at 729.659 kb on - strand, within RR42_RS24090 at 729.666 kb on - strand, within RR42_RS24090 at 729.680 kb on + strand, within RR42_RS24090 at 729.710 kb on + strand, within RR42_RS24090 at 729.710 kb on + strand, within RR42_RS24090 at 729.710 kb on + strand, within RR42_RS24090 at 729.711 kb on - strand, within RR42_RS24090 at 729.717 kb on - strand, within RR42_RS24090 at 729.791 kb on - strand, within RR42_RS24090 at 729.822 kb on - strand, within RR42_RS24090 at 729.822 kb on - strand, within RR42_RS24090 at 729.822 kb on - strand, within RR42_RS24090 at 729.822 kb on - strand, within RR42_RS24090 at 729.822 kb on - strand, within RR42_RS24090 at 729.842 kb on - strand, within RR42_RS24090 at 730.026 kb on + strand, within RR42_RS24090 at 730.027 kb on - strand, within RR42_RS24090 at 730.027 kb on - strand, within RR42_RS24090 at 730.027 kb on - strand, within RR42_RS24090 at 730.200 kb on + strand, within RR42_RS24090 at 730.200 kb on + strand, within RR42_RS24090 at 730.200 kb on + strand, within RR42_RS24090 at 730.210 kb on + strand, within RR42_RS24090 at 730.210 kb on + strand, within RR42_RS24090 at 730.230 kb on + strand, within RR42_RS24090 at 730.231 kb on - strand, within RR42_RS24090 at 730.231 kb on - strand, within RR42_RS24090 at 730.231 kb on - strand, within RR42_RS24090 at 730.326 kb on - strand, within RR42_RS24090 at 730.326 kb on - strand, within RR42_RS24090
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 727,415 + +2.1 727,416 - +0.4 727,416 - +0.2 727,613 + RR42_RS24080 0.29 +0.2 727,613 + RR42_RS24080 0.29 +1.0 727,828 + RR42_RS24080 0.53 -0.8 727,835 + RR42_RS24080 0.54 -0.4 727,836 - RR42_RS24080 0.54 -1.3 727,933 + RR42_RS24080 0.65 +1.7 727,934 - RR42_RS24080 0.65 -1.8 727,958 - RR42_RS24080 0.68 +1.1 728,036 - RR42_RS24080 0.76 -0.1 728,036 - RR42_RS24080 0.76 -0.2 728,202 + +1.7 728,203 - +0.2 728,203 - +0.6 728,262 + +1.5 728,352 + -2.9 728,352 + +1.4 728,352 + +1.0 728,353 - -2.5 728,353 - +1.2 728,353 - -0.1 728,353 - -0.8 728,356 + +0.7 728,357 - -0.2 728,379 + -0.0 728,380 - -1.1 728,423 + -1.3 728,424 - -0.0 728,431 - -0.9 728,431 - -2.2 728,431 - -3.1 728,442 + -2.1 728,442 + -2.1 728,442 + -1.0 728,442 + +0.8 728,443 - -1.8 728,443 - +1.5 728,494 - -0.6 728,659 + RR42_RS24085 0.26 +0.7 728,659 + RR42_RS24085 0.26 +0.2 728,660 - RR42_RS24085 0.26 -1.3 728,662 - RR42_RS24085 0.26 +2.2 728,708 + RR42_RS24085 0.31 -0.6 728,709 - RR42_RS24085 0.31 +0.5 728,709 - RR42_RS24085 0.31 +0.3 728,709 - RR42_RS24085 0.31 +0.2 728,711 - RR42_RS24085 0.31 -0.4 728,711 - RR42_RS24085 0.31 -1.5 728,711 - RR42_RS24085 0.31 +0.9 728,713 - RR42_RS24085 0.32 +0.3 728,786 + RR42_RS24085 0.39 -0.1 728,817 + RR42_RS24085 0.42 -2.4 728,818 - RR42_RS24085 0.42 +1.5 728,864 - RR42_RS24085 0.47 +0.2 728,937 + RR42_RS24085 0.55 -0.8 728,950 + RR42_RS24085 0.56 -1.8 729,023 + RR42_RS24085 0.64 -0.6 729,024 - RR42_RS24085 0.64 -1.3 729,078 + RR42_RS24085 0.69 +0.9 729,078 + RR42_RS24085 0.69 -1.3 729,078 + RR42_RS24085 0.69 +1.8 729,079 - RR42_RS24085 0.69 -0.6 729,104 + RR42_RS24085 0.72 -3.2 729,105 - RR42_RS24085 0.72 -1.0 729,105 - RR42_RS24085 0.72 -0.2 729,105 - RR42_RS24085 0.72 +0.9 729,154 + RR42_RS24085 0.77 -1.7 729,154 + RR42_RS24085 0.77 +0.5 729,155 - RR42_RS24085 0.77 +0.5 729,253 + RR42_RS24085 0.87 +1.2 729,254 - RR42_RS24085 0.87 -1.2 729,254 - RR42_RS24085 0.87 -1.1 729,312 + -1.8 729,313 - +0.4 729,313 - -0.1 729,333 + -0.1 729,431 + +0.3 729,432 - +0.7 729,432 - -1.8 729,432 - -2.8 729,484 - +0.7 729,495 + -0.3 729,495 + +0.6 729,496 - +0.7 729,512 - +0.2 729,512 - +1.4 729,584 + -0.2 729,585 - +0.1 729,585 - -4.0 729,585 - -3.1 729,585 - +0.0 729,640 + RR42_RS24090 0.15 +0.7 729,641 - RR42_RS24090 0.16 +0.4 729,654 + RR42_RS24090 0.17 -0.1 729,658 + RR42_RS24090 0.17 -0.2 729,658 + RR42_RS24090 0.17 +0.7 729,659 - RR42_RS24090 0.17 -1.6 729,666 - RR42_RS24090 0.18 +0.2 729,680 + RR42_RS24090 0.19 +1.2 729,710 + RR42_RS24090 0.22 -0.6 729,710 + RR42_RS24090 0.22 +0.2 729,710 + RR42_RS24090 0.22 -0.4 729,711 - RR42_RS24090 0.23 +0.8 729,717 - RR42_RS24090 0.23 -0.7 729,791 - RR42_RS24090 0.31 +1.4 729,822 - RR42_RS24090 0.34 +0.2 729,822 - RR42_RS24090 0.34 -0.0 729,822 - RR42_RS24090 0.34 -1.9 729,822 - RR42_RS24090 0.34 +0.2 729,822 - RR42_RS24090 0.34 -0.3 729,842 - RR42_RS24090 0.36 -0.7 730,026 + RR42_RS24090 0.54 +0.7 730,027 - RR42_RS24090 0.54 +0.2 730,027 - RR42_RS24090 0.54 +0.5 730,027 - RR42_RS24090 0.54 -0.8 730,200 + RR42_RS24090 0.72 -0.2 730,200 + RR42_RS24090 0.72 -0.8 730,200 + RR42_RS24090 0.72 -1.0 730,210 + RR42_RS24090 0.73 -0.0 730,210 + RR42_RS24090 0.73 +0.4 730,230 + RR42_RS24090 0.75 +0.8 730,231 - RR42_RS24090 0.75 -1.2 730,231 - RR42_RS24090 0.75 +1.0 730,231 - RR42_RS24090 0.75 -1.0 730,326 - RR42_RS24090 0.84 +0.6 730,326 - RR42_RS24090 0.84 -1.9
Or see this region's nucleotide sequence