Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23735 and RR42_RS23740 are separated by 6 nucleotides RR42_RS23740 and RR42_RS23745 are separated by 26 nucleotides RR42_RS23745 and RR42_RS23750 are separated by 66 nucleotides
RR42_RS23735: RR42_RS23735 - phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) <small>(from data)</small>, at 649,875 to 650,675
_RS23735
RR42_RS23740: RR42_RS23740 - phenylacetate-CoA oxygenase, at 650,682 to 651,248
_RS23740
RR42_RS23745: RR42_RS23745 - phenylacetic acid degradation protein, at 651,275 to 652,363
_RS23745
RR42_RS23750: RR42_RS23750 - aldehyde dehydrogenase, at 652,430 to 654,112
_RS23750
Position (kb) 651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2 at 650.410 kb on - strand, within RR42_RS23735 at 650.620 kb on - strand at 650.673 kb on + strand at 650.856 kb on + strand, within RR42_RS23740 at 651.198 kb on + strand at 651.199 kb on - strand at 651.199 kb on - strand at 651.231 kb on + strand at 651.244 kb on - strand at 651.636 kb on - strand, within RR42_RS23745 at 652.136 kb on + strand, within RR42_RS23745 at 652.137 kb on - strand, within RR42_RS23745 at 652.190 kb on + strand, within RR42_RS23745 at 652.190 kb on + strand, within RR42_RS23745 at 652.191 kb on - strand, within RR42_RS23745 at 652.191 kb on - strand, within RR42_RS23745 at 652.349 kb on + strand at 652.502 kb on + strand at 652.899 kb on + strand, within RR42_RS23750 at 652.899 kb on + strand, within RR42_RS23750 at 652.913 kb on + strand, within RR42_RS23750 at 652.914 kb on - strand, within RR42_RS23750 at 652.952 kb on + strand, within RR42_RS23750 at 653.070 kb on - strand, within RR42_RS23750 at 653.348 kb on + strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 650,410 - RR42_RS23735 0.67 -1.1 650,620 - -1.3 650,673 + -0.2 650,856 + RR42_RS23740 0.31 +1.3 651,198 + +1.3 651,199 - -0.6 651,199 - -2.5 651,231 + +1.6 651,244 - +0.7 651,636 - RR42_RS23745 0.33 +2.1 652,136 + RR42_RS23745 0.79 -0.9 652,137 - RR42_RS23745 0.79 -0.6 652,190 + RR42_RS23745 0.84 +0.0 652,190 + RR42_RS23745 0.84 +0.1 652,191 - RR42_RS23745 0.84 -0.8 652,191 - RR42_RS23745 0.84 -1.2 652,349 + -0.6 652,502 + +0.1 652,899 + RR42_RS23750 0.28 +0.8 652,899 + RR42_RS23750 0.28 +0.2 652,913 + RR42_RS23750 0.29 +1.2 652,914 - RR42_RS23750 0.29 -1.0 652,952 + RR42_RS23750 0.31 -1.1 653,070 - RR42_RS23750 0.38 +0.1 653,348 + RR42_RS23750 0.55 -0.1 653,349 - RR42_RS23750 0.55 +1.9 653,349 - RR42_RS23750 0.55 +0.3 653,349 - RR42_RS23750 0.55 +0.8
Or see this region's nucleotide sequence