Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23505

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS23500 and RR42_RS23505 are separated by 132 nucleotidesRR42_RS23505 and RR42_RS23510 are separated by 196 nucleotides RR42_RS23500: RR42_RS23500 - benzene 1,2-dioxygenase, at 597,744 to 599,132 _RS23500 RR42_RS23505: RR42_RS23505 - catechol 1,2-dioxygenase, at 599,265 to 600,179 _RS23505 RR42_RS23510: RR42_RS23510 - LysR family transcriptional regulator, at 600,376 to 601,293 _RS23510 Position (kb) 599 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 598.339 kb on + strand, within RR42_RS23500at 598.425 kb on - strand, within RR42_RS23500at 598.425 kb on - strand, within RR42_RS23500at 598.438 kb on + strand, within RR42_RS23500at 598.514 kb on + strand, within RR42_RS23500at 598.516 kb on + strand, within RR42_RS23500at 598.516 kb on + strand, within RR42_RS23500at 598.517 kb on - strand, within RR42_RS23500at 598.517 kb on - strand, within RR42_RS23500at 598.795 kb on + strand, within RR42_RS23500at 598.796 kb on - strand, within RR42_RS23500at 598.796 kb on - strand, within RR42_RS23500at 598.918 kb on + strand, within RR42_RS23500at 598.919 kb on - strand, within RR42_RS23500at 598.927 kb on + strand, within RR42_RS23500at 598.927 kb on + strand, within RR42_RS23500at 598.928 kb on - strand, within RR42_RS23500at 598.931 kb on - strand, within RR42_RS23500at 598.931 kb on - strand, within RR42_RS23500at 598.969 kb on + strand, within RR42_RS23500at 598.969 kb on + strand, within RR42_RS23500at 599.120 kb on - strandat 599.120 kb on - strandat 599.267 kb on - strandat 599.603 kb on - strand, within RR42_RS23505at 599.603 kb on - strand, within RR42_RS23505at 599.704 kb on + strand, within RR42_RS23505at 599.704 kb on + strand, within RR42_RS23505at 599.704 kb on + strand, within RR42_RS23505at 599.705 kb on - strand, within RR42_RS23505at 599.869 kb on + strand, within RR42_RS23505at 599.869 kb on + strand, within RR42_RS23505at 599.869 kb on + strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 600.010 kb on + strand, within RR42_RS23505at 600.206 kb on + strandat 600.206 kb on + strandat 600.207 kb on - strandat 600.207 kb on - strandat 600.260 kb on - strandat 600.276 kb on - strandat 600.310 kb on + strandat 600.311 kb on - strandat 600.363 kb on - strandat 600.392 kb on + strandat 600.392 kb on + strandat 600.393 kb on - strandat 600.398 kb on - strandat 600.454 kb on - strandat 600.679 kb on + strand, within RR42_RS23510at 600.679 kb on + strand, within RR42_RS23510at 600.679 kb on + strand, within RR42_RS23510at 600.680 kb on - strand, within RR42_RS23510at 600.680 kb on - strand, within RR42_RS23510at 600.680 kb on - strand, within RR42_RS23510at 600.979 kb on + strand, within RR42_RS23510at 600.979 kb on + strand, within RR42_RS23510at 600.979 kb on + strand, within RR42_RS23510at 600.980 kb on - strand, within RR42_RS23510at 600.980 kb on - strand, within RR42_RS23510at 600.980 kb on - strand, within RR42_RS23510at 600.980 kb on - strand, within RR42_RS23510at 601.141 kb on + strand, within RR42_RS23510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
598,339 + RR42_RS23500 0.43 +0.0
598,425 - RR42_RS23500 0.49 -0.7
598,425 - RR42_RS23500 0.49 +2.0
598,438 + RR42_RS23500 0.50 +0.9
598,514 + RR42_RS23500 0.55 +0.6
598,516 + RR42_RS23500 0.56 -2.1
598,516 + RR42_RS23500 0.56 +1.6
598,517 - RR42_RS23500 0.56 -2.7
598,517 - RR42_RS23500 0.56 -1.0
598,795 + RR42_RS23500 0.76 -1.0
598,796 - RR42_RS23500 0.76 +0.2
598,796 - RR42_RS23500 0.76 +0.1
598,918 + RR42_RS23500 0.85 +0.1
598,919 - RR42_RS23500 0.85 -0.0
598,927 + RR42_RS23500 0.85 +1.1
598,927 + RR42_RS23500 0.85 +0.8
598,928 - RR42_RS23500 0.85 +2.5
598,931 - RR42_RS23500 0.85 -3.7
598,931 - RR42_RS23500 0.85 -1.0
598,969 + RR42_RS23500 0.88 -0.1
598,969 + RR42_RS23500 0.88 +0.8
599,120 - -2.0
599,120 - -2.9
599,267 - +1.3
599,603 - RR42_RS23505 0.37 +0.2
599,603 - RR42_RS23505 0.37 +0.8
599,704 + RR42_RS23505 0.48 -0.8
599,704 + RR42_RS23505 0.48 -0.9
599,704 + RR42_RS23505 0.48 -0.7
599,705 - RR42_RS23505 0.48 +0.7
599,869 + RR42_RS23505 0.66 -0.1
599,869 + RR42_RS23505 0.66 +1.9
599,869 + RR42_RS23505 0.66 +0.9
599,870 - RR42_RS23505 0.66 +1.1
599,870 - RR42_RS23505 0.66 +0.3
599,870 - RR42_RS23505 0.66 +1.3
599,870 - RR42_RS23505 0.66 +0.3
599,870 - RR42_RS23505 0.66 -2.4
599,870 - RR42_RS23505 0.66 -0.2
599,870 - RR42_RS23505 0.66 +1.0
599,870 - RR42_RS23505 0.66 -0.4
600,010 + RR42_RS23505 0.81 +0.9
600,206 + +1.0
600,206 + +0.0
600,207 - -0.8
600,207 - +2.3
600,260 - +1.7
600,276 - -0.3
600,310 + -1.5
600,311 - -0.6
600,363 - +0.1
600,392 + +1.3
600,392 + +0.5
600,393 - +0.1
600,398 - +2.7
600,454 - -1.7
600,679 + RR42_RS23510 0.33 -1.0
600,679 + RR42_RS23510 0.33 -1.6
600,679 + RR42_RS23510 0.33 +0.3
600,680 - RR42_RS23510 0.33 -2.8
600,680 - RR42_RS23510 0.33 +0.5
600,680 - RR42_RS23510 0.33 +1.3
600,979 + RR42_RS23510 0.66 +0.5
600,979 + RR42_RS23510 0.66 -1.0
600,979 + RR42_RS23510 0.66 -0.4
600,980 - RR42_RS23510 0.66 +1.7
600,980 - RR42_RS23510 0.66 -0.6
600,980 - RR42_RS23510 0.66 -1.9
600,980 - RR42_RS23510 0.66 -0.9
601,141 + RR42_RS23510 0.83 -0.9

Or see this region's nucleotide sequence