Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23330 and RR42_RS23335 overlap by 9 nucleotides RR42_RS23335 and RR42_RS23340 are separated by 491 nucleotides RR42_RS23340 and RR42_RS23345 are separated by 104 nucleotides
RR42_RS23330: RR42_RS23330 - class A beta-lactamase, at 565,293 to 566,180
_RS23330
RR42_RS23335: RR42_RS23335 - hypothetical protein, at 566,172 to 566,552
_RS23335
RR42_RS23340: RR42_RS23340 - RNA ligase, at 567,044 to 568,270
_RS23340
RR42_RS23345: RR42_RS23345 - hypothetical protein, at 568,375 to 569,220
_RS23345
Position (kb) 567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 566.174 kb on - strand at 566.178 kb on + strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.224 kb on - strand, within RR42_RS23335 at 566.274 kb on - strand, within RR42_RS23335 at 566.347 kb on + strand, within RR42_RS23335 at 566.347 kb on + strand, within RR42_RS23335 at 566.347 kb on + strand, within RR42_RS23335 at 566.347 kb on + strand, within RR42_RS23335 at 566.348 kb on - strand, within RR42_RS23335 at 566.348 kb on - strand, within RR42_RS23335 at 566.849 kb on + strand at 566.850 kb on - strand at 566.850 kb on - strand at 566.919 kb on - strand at 566.921 kb on + strand at 566.921 kb on + strand at 566.921 kb on + strand at 566.921 kb on + strand at 566.921 kb on + strand at 566.922 kb on - strand at 566.922 kb on - strand at 566.922 kb on - strand at 566.922 kb on - strand at 566.945 kb on + strand at 566.945 kb on + strand at 566.945 kb on + strand at 566.946 kb on - strand at 566.981 kb on + strand at 566.982 kb on - strand at 566.982 kb on - strand at 566.982 kb on - strand at 566.982 kb on - strand at 567.011 kb on + strand at 567.060 kb on - strand at 567.067 kb on - strand at 567.067 kb on - strand at 567.067 kb on - strand at 567.067 kb on - strand at 567.202 kb on - strand, within RR42_RS23340 at 567.202 kb on - strand, within RR42_RS23340 at 567.497 kb on + strand, within RR42_RS23340 at 567.498 kb on - strand, within RR42_RS23340 at 567.652 kb on + strand, within RR42_RS23340 at 567.750 kb on - strand, within RR42_RS23340 at 567.886 kb on + strand, within RR42_RS23340 at 567.886 kb on + strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 568.005 kb on - strand, within RR42_RS23340 at 568.005 kb on - strand, within RR42_RS23340 at 568.182 kb on - strand at 568.486 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.862 kb on - strand, within RR42_RS23345 at 569.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 566,174 - -3.3 566,178 + +1.6 566,179 - +0.3 566,179 - -0.5 566,179 - -0.3 566,179 - +0.2 566,179 - +0.9 566,224 - RR42_RS23335 0.14 -1.8 566,274 - RR42_RS23335 0.27 +0.7 566,347 + RR42_RS23335 0.46 -0.7 566,347 + RR42_RS23335 0.46 -0.9 566,347 + RR42_RS23335 0.46 -1.7 566,347 + RR42_RS23335 0.46 +1.7 566,348 - RR42_RS23335 0.46 -0.1 566,348 - RR42_RS23335 0.46 +0.6 566,849 + +0.1 566,850 - +0.1 566,850 - -1.9 566,919 - +0.3 566,921 + -0.3 566,921 + -1.7 566,921 + -0.8 566,921 + +1.6 566,921 + +2.1 566,922 - -0.3 566,922 - +0.9 566,922 - -2.2 566,922 - +2.1 566,945 + +0.7 566,945 + -2.3 566,945 + +0.3 566,946 - -0.3 566,981 + +1.1 566,982 - -0.3 566,982 - -1.1 566,982 - +0.8 566,982 - -1.9 567,011 + +0.4 567,060 - +2.3 567,067 - +0.7 567,067 - +1.5 567,067 - +0.5 567,067 - +0.1 567,202 - RR42_RS23340 0.13 -0.2 567,202 - RR42_RS23340 0.13 -1.5 567,497 + RR42_RS23340 0.37 -2.9 567,498 - RR42_RS23340 0.37 +0.9 567,652 + RR42_RS23340 0.50 +1.2 567,750 - RR42_RS23340 0.58 +1.2 567,886 + RR42_RS23340 0.69 -1.5 567,886 + RR42_RS23340 0.69 +0.5 567,887 - RR42_RS23340 0.69 +0.5 567,887 - RR42_RS23340 0.69 -0.3 567,887 - RR42_RS23340 0.69 -1.2 567,890 + RR42_RS23340 0.69 -1.0 567,890 + RR42_RS23340 0.69 -0.0 567,890 + RR42_RS23340 0.69 +2.3 568,005 - RR42_RS23340 0.78 -1.9 568,005 - RR42_RS23340 0.78 -0.2 568,182 - +0.7 568,486 + RR42_RS23345 0.13 +0.6 568,667 + RR42_RS23345 0.35 -0.4 568,667 + RR42_RS23345 0.35 +0.5 568,667 + RR42_RS23345 0.35 +1.3 568,667 + RR42_RS23345 0.35 -0.7 568,668 - RR42_RS23345 0.35 -0.3 568,668 - RR42_RS23345 0.35 -0.2 568,668 - RR42_RS23345 0.35 -0.5 568,862 - RR42_RS23345 0.58 +1.5 569,202 - -0.0
Or see this region's nucleotide sequence