Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22900

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22895 and RR42_RS22900 overlap by 4 nucleotidesRR42_RS22900 and RR42_RS22905 are separated by 81 nucleotides RR42_RS22895: RR42_RS22895 - 5-oxoprolinase, at 467,955 to 470,084 _RS22895 RR42_RS22900: RR42_RS22900 - 5-oxoprolinase, at 470,081 to 471,814 _RS22900 RR42_RS22905: RR42_RS22905 - myristoyl transferase, at 471,896 to 472,885 _RS22905 Position (kb) 470 471 472Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 469.722 kb on - strand, within RR42_RS22895at 469.722 kb on - strand, within RR42_RS22895at 469.809 kb on + strand, within RR42_RS22895at 470.414 kb on + strand, within RR42_RS22900at 470.513 kb on + strand, within RR42_RS22900at 470.550 kb on - strand, within RR42_RS22900at 470.622 kb on + strand, within RR42_RS22900at 470.623 kb on - strand, within RR42_RS22900at 470.642 kb on + strand, within RR42_RS22900at 470.673 kb on + strand, within RR42_RS22900at 470.673 kb on + strand, within RR42_RS22900at 470.674 kb on - strand, within RR42_RS22900at 470.804 kb on + strand, within RR42_RS22900at 470.804 kb on + strand, within RR42_RS22900at 470.805 kb on - strand, within RR42_RS22900at 470.874 kb on - strand, within RR42_RS22900at 470.888 kb on + strand, within RR42_RS22900at 470.939 kb on + strand, within RR42_RS22900at 470.940 kb on - strand, within RR42_RS22900at 470.957 kb on + strand, within RR42_RS22900at 470.957 kb on + strand, within RR42_RS22900at 470.958 kb on - strand, within RR42_RS22900at 470.958 kb on - strand, within RR42_RS22900at 471.221 kb on + strand, within RR42_RS22900at 471.221 kb on + strand, within RR42_RS22900at 471.221 kb on + strand, within RR42_RS22900at 471.221 kb on + strand, within RR42_RS22900at 471.221 kb on + strand, within RR42_RS22900at 471.222 kb on - strand, within RR42_RS22900at 471.365 kb on + strand, within RR42_RS22900at 471.366 kb on - strand, within RR42_RS22900at 471.616 kb on + strand, within RR42_RS22900at 471.725 kb on + strandat 471.725 kb on + strandat 471.725 kb on + strandat 471.816 kb on - strandat 472.001 kb on + strand, within RR42_RS22905at 472.378 kb on + strand, within RR42_RS22905at 472.535 kb on + strand, within RR42_RS22905at 472.628 kb on + strand, within RR42_RS22905at 472.629 kb on - strand, within RR42_RS22905at 472.629 kb on - strand, within RR42_RS22905at 472.629 kb on - strand, within RR42_RS22905at 472.724 kb on + strand, within RR42_RS22905at 472.725 kb on - strand, within RR42_RS22905

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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469,722 - RR42_RS22895 0.83 -0.1
469,722 - RR42_RS22895 0.83 -0.7
469,809 + RR42_RS22895 0.87 -0.1
470,414 + RR42_RS22900 0.19 -0.8
470,513 + RR42_RS22900 0.25 +0.0
470,550 - RR42_RS22900 0.27 +0.4
470,622 + RR42_RS22900 0.31 -2.4
470,623 - RR42_RS22900 0.31 +1.6
470,642 + RR42_RS22900 0.32 -1.2
470,673 + RR42_RS22900 0.34 +0.1
470,673 + RR42_RS22900 0.34 -0.4
470,674 - RR42_RS22900 0.34 -1.3
470,804 + RR42_RS22900 0.42 -1.5
470,804 + RR42_RS22900 0.42 +1.8
470,805 - RR42_RS22900 0.42 +1.2
470,874 - RR42_RS22900 0.46 +0.3
470,888 + RR42_RS22900 0.47 -1.7
470,939 + RR42_RS22900 0.49 -0.4
470,940 - RR42_RS22900 0.50 +0.1
470,957 + RR42_RS22900 0.51 +0.3
470,957 + RR42_RS22900 0.51 +1.5
470,958 - RR42_RS22900 0.51 -0.3
470,958 - RR42_RS22900 0.51 -1.4
471,221 + RR42_RS22900 0.66 +1.6
471,221 + RR42_RS22900 0.66 +1.2
471,221 + RR42_RS22900 0.66 +1.1
471,221 + RR42_RS22900 0.66 +0.8
471,221 + RR42_RS22900 0.66 -2.0
471,222 - RR42_RS22900 0.66 -0.3
471,365 + RR42_RS22900 0.74 -0.6
471,366 - RR42_RS22900 0.74 -1.1
471,616 + RR42_RS22900 0.89 -1.9
471,725 + -1.9
471,725 + -1.8
471,725 + +0.7
471,816 - -0.9
472,001 + RR42_RS22905 0.11 +0.3
472,378 + RR42_RS22905 0.49 +0.3
472,535 + RR42_RS22905 0.65 -2.0
472,628 + RR42_RS22905 0.74 +0.4
472,629 - RR42_RS22905 0.74 -1.5
472,629 - RR42_RS22905 0.74 -3.2
472,629 - RR42_RS22905 0.74 +0.7
472,724 + RR42_RS22905 0.84 +0.8
472,725 - RR42_RS22905 0.84 -0.3

Or see this region's nucleotide sequence