Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22295 and RR42_RS22300 are separated by 226 nucleotides RR42_RS22300 and RR42_RS22305 are separated by 20 nucleotides RR42_RS22305 and RR42_RS22310 are separated by 12 nucleotides
RR42_RS22295: RR42_RS22295 - methionine sulfoxide reductase B, at 343,274 to 343,813
_RS22295
RR42_RS22300: RR42_RS22300 - chemotaxis protein CheY, at 344,040 to 344,762
_RS22300
RR42_RS22305: RR42_RS22305 - histidine kinase, at 344,783 to 346,276
_RS22305
RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188
_RS22310
Position (kb) 344
345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.835 kb on + strand at 343.835 kb on + strand at 343.893 kb on + strand at 343.894 kb on - strand at 343.894 kb on - strand at 343.934 kb on + strand at 343.972 kb on - strand at 344.095 kb on + strand at 344.095 kb on + strand at 344.096 kb on - strand at 344.096 kb on - strand at 344.124 kb on + strand, within RR42_RS22300 at 344.125 kb on - strand, within RR42_RS22300 at 344.265 kb on + strand, within RR42_RS22300 at 344.266 kb on - strand, within RR42_RS22300 at 344.343 kb on + strand, within RR42_RS22300 at 344.343 kb on + strand, within RR42_RS22300 at 344.344 kb on - strand, within RR42_RS22300 at 344.544 kb on + strand, within RR42_RS22300 at 344.633 kb on + strand, within RR42_RS22300 at 344.633 kb on + strand, within RR42_RS22300 at 344.634 kb on - strand, within RR42_RS22300 at 344.634 kb on - strand, within RR42_RS22300 at 344.648 kb on + strand, within RR42_RS22300 at 344.648 kb on + strand, within RR42_RS22300 at 344.648 kb on + strand, within RR42_RS22300 at 344.724 kb on + strand at 344.724 kb on + strand at 344.725 kb on - strand at 345.034 kb on - strand, within RR42_RS22305 at 345.041 kb on + strand, within RR42_RS22305 at 345.041 kb on + strand, within RR42_RS22305 at 345.042 kb on - strand, within RR42_RS22305 at 345.244 kb on + strand, within RR42_RS22305 at 345.245 kb on + strand, within RR42_RS22305 at 345.251 kb on + strand, within RR42_RS22305 at 345.251 kb on + strand, within RR42_RS22305 at 345.251 kb on + strand, within RR42_RS22305 at 345.251 kb on + strand, within RR42_RS22305 at 345.252 kb on - strand, within RR42_RS22305 at 345.252 kb on - strand, within RR42_RS22305 at 345.252 kb on - strand, within RR42_RS22305 at 345.607 kb on + strand, within RR42_RS22305 at 345.651 kb on - strand, within RR42_RS22305 at 345.708 kb on - strand, within RR42_RS22305 at 345.708 kb on - strand, within RR42_RS22305 at 346.220 kb on - strand at 346.220 kb on - strand at 346.363 kb on - strand at 346.381 kb on - strand, within RR42_RS22310 at 346.463 kb on - strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.200 kb on + strand at 347.219 kb on + strand at 347.219 kb on + strand at 347.254 kb on - strand at 347.259 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 343,835 + -1.8 343,835 + +0.2 343,893 + +0.3 343,894 - +2.3 343,894 - +0.6 343,934 + +2.3 343,972 - +0.1 344,095 + -1.7 344,095 + -2.0 344,096 - -1.0 344,096 - +0.4 344,124 + RR42_RS22300 0.12 +0.7 344,125 - RR42_RS22300 0.12 -0.4 344,265 + RR42_RS22300 0.31 +0.3 344,266 - RR42_RS22300 0.31 -0.0 344,343 + RR42_RS22300 0.42 -1.2 344,343 + RR42_RS22300 0.42 +1.3 344,344 - RR42_RS22300 0.42 -1.0 344,544 + RR42_RS22300 0.70 +0.3 344,633 + RR42_RS22300 0.82 -0.2 344,633 + RR42_RS22300 0.82 +0.5 344,634 - RR42_RS22300 0.82 -2.1 344,634 - RR42_RS22300 0.82 -0.6 344,648 + RR42_RS22300 0.84 +0.5 344,648 + RR42_RS22300 0.84 -2.1 344,648 + RR42_RS22300 0.84 +0.3 344,724 + -0.3 344,724 + +1.3 344,725 - -0.6 345,034 - RR42_RS22305 0.17 +0.1 345,041 + RR42_RS22305 0.17 -0.4 345,041 + RR42_RS22305 0.17 -1.2 345,042 - RR42_RS22305 0.17 +0.2 345,244 + RR42_RS22305 0.31 +1.4 345,245 + RR42_RS22305 0.31 -1.5 345,251 + RR42_RS22305 0.31 +0.2 345,251 + RR42_RS22305 0.31 +0.0 345,251 + RR42_RS22305 0.31 -1.7 345,251 + RR42_RS22305 0.31 -0.1 345,252 - RR42_RS22305 0.31 +1.8 345,252 - RR42_RS22305 0.31 +0.8 345,252 - RR42_RS22305 0.31 -1.2 345,607 + RR42_RS22305 0.55 +1.3 345,651 - RR42_RS22305 0.58 +0.8 345,708 - RR42_RS22305 0.62 -0.2 345,708 - RR42_RS22305 0.62 -1.6 346,220 - -1.7 346,220 - +1.3 346,363 - -0.7 346,381 - RR42_RS22310 0.10 +0.3 346,463 - RR42_RS22310 0.19 +0.1 346,528 + RR42_RS22310 0.27 +0.3 346,528 + RR42_RS22310 0.27 +0.6 346,529 - RR42_RS22310 0.27 +1.0 346,529 - RR42_RS22310 0.27 +1.2 346,529 - RR42_RS22310 0.27 -1.0 347,069 - RR42_RS22310 0.87 +1.1 347,069 - RR42_RS22310 0.87 +1.1 347,070 + RR42_RS22310 0.87 +0.8 347,070 + RR42_RS22310 0.87 -1.5 347,071 - RR42_RS22310 0.87 -0.6 347,071 - RR42_RS22310 0.87 -0.2 347,200 + -0.4 347,219 + -0.1 347,219 + -0.8 347,254 - +1.1 347,259 + -0.1
Or see this region's nucleotide sequence