Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21935

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21930 and RR42_RS21935 are separated by 253 nucleotidesRR42_RS21935 and RR42_RS21940 are separated by 164 nucleotides RR42_RS21930: RR42_RS21930 - hypothetical protein, at 245,174 to 246,007 _RS21930 RR42_RS21935: RR42_RS21935 - 4-hydroxybenzoate transporter, at 246,261 to 247,601 _RS21935 RR42_RS21940: RR42_RS21940 - 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data), at 247,766 to 248,935 _RS21940 Position (kb) 246 247 248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 245.346 kb on + strand, within RR42_RS21930at 245.346 kb on + strand, within RR42_RS21930at 245.346 kb on + strand, within RR42_RS21930at 245.347 kb on - strand, within RR42_RS21930at 245.598 kb on + strand, within RR42_RS21930at 245.849 kb on - strand, within RR42_RS21930at 245.898 kb on + strand, within RR42_RS21930at 245.898 kb on + strand, within RR42_RS21930at 245.899 kb on - strand, within RR42_RS21930at 245.899 kb on - strand, within RR42_RS21930at 245.899 kb on - strand, within RR42_RS21930at 245.910 kb on + strand, within RR42_RS21930at 245.985 kb on + strandat 245.986 kb on - strandat 245.986 kb on - strandat 245.997 kb on + strandat 245.997 kb on + strandat 245.998 kb on - strandat 246.040 kb on + strandat 246.054 kb on - strandat 246.063 kb on + strandat 246.064 kb on - strandat 246.064 kb on - strandat 246.072 kb on + strandat 246.072 kb on + strandat 246.073 kb on - strandat 246.073 kb on - strandat 246.073 kb on - strandat 246.081 kb on - strandat 246.130 kb on + strandat 246.131 kb on - strandat 246.172 kb on + strandat 246.173 kb on - strandat 246.375 kb on + strandat 246.375 kb on + strandat 246.376 kb on - strandat 246.496 kb on + strand, within RR42_RS21935at 246.496 kb on + strand, within RR42_RS21935at 246.497 kb on - strand, within RR42_RS21935at 246.515 kb on + strand, within RR42_RS21935at 246.516 kb on - strand, within RR42_RS21935at 246.516 kb on - strand, within RR42_RS21935at 246.610 kb on + strand, within RR42_RS21935at 246.611 kb on - strand, within RR42_RS21935at 246.799 kb on + strand, within RR42_RS21935at 246.799 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.824 kb on - strand, within RR42_RS21935at 246.824 kb on - strand, within RR42_RS21935at 246.939 kb on + strand, within RR42_RS21935at 246.939 kb on + strand, within RR42_RS21935at 246.940 kb on - strand, within RR42_RS21935at 247.096 kb on + strand, within RR42_RS21935at 247.148 kb on + strand, within RR42_RS21935at 247.149 kb on - strand, within RR42_RS21935at 247.201 kb on + strand, within RR42_RS21935at 247.484 kb on + strandat 247.684 kb on + strandat 247.771 kb on - strandat 247.786 kb on - strandat 247.786 kb on - strandat 247.786 kb on - strandat 247.956 kb on + strand, within RR42_RS21940at 247.957 kb on - strand, within RR42_RS21940at 248.016 kb on + strand, within RR42_RS21940at 248.016 kb on + strand, within RR42_RS21940at 248.017 kb on - strand, within RR42_RS21940at 248.017 kb on - strand, within RR42_RS21940at 248.192 kb on - strand, within RR42_RS21940at 248.194 kb on + strand, within RR42_RS21940at 248.274 kb on + strand, within RR42_RS21940at 248.277 kb on + strand, within RR42_RS21940at 248.277 kb on + strand, within RR42_RS21940at 248.278 kb on - strand, within RR42_RS21940at 248.337 kb on + strand, within RR42_RS21940at 248.337 kb on + strand, within RR42_RS21940at 248.338 kb on - strand, within RR42_RS21940at 248.338 kb on - strand, within RR42_RS21940at 248.397 kb on + strand, within RR42_RS21940at 248.497 kb on - strand, within RR42_RS21940at 248.574 kb on + strand, within RR42_RS21940at 248.575 kb on - strand, within RR42_RS21940

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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245,346 + RR42_RS21930 0.21 -0.4
245,346 + RR42_RS21930 0.21 -1.9
245,346 + RR42_RS21930 0.21 -1.8
245,347 - RR42_RS21930 0.21 +1.4
245,598 + RR42_RS21930 0.51 -1.2
245,849 - RR42_RS21930 0.81 -0.2
245,898 + RR42_RS21930 0.87 -0.6
245,898 + RR42_RS21930 0.87 -0.5
245,899 - RR42_RS21930 0.87 +1.3
245,899 - RR42_RS21930 0.87 -0.6
245,899 - RR42_RS21930 0.87 -0.9
245,910 + RR42_RS21930 0.88 -1.7
245,985 + -1.5
245,986 - +0.8
245,986 - +0.9
245,997 + -1.7
245,997 + -1.8
245,998 - -1.1
246,040 + -2.9
246,054 - -0.5
246,063 + -2.0
246,064 - -2.5
246,064 - -0.4
246,072 + +1.1
246,072 + -0.6
246,073 - +0.2
246,073 - -2.0
246,073 - +0.8
246,081 - -0.1
246,130 + +1.4
246,131 - +0.3
246,172 + +0.2
246,173 - -0.9
246,375 + -2.7
246,375 + -1.0
246,376 - -1.2
246,496 + RR42_RS21935 0.18 -0.4
246,496 + RR42_RS21935 0.18 -1.8
246,497 - RR42_RS21935 0.18 +1.0
246,515 + RR42_RS21935 0.19 -3.9
246,516 - RR42_RS21935 0.19 -0.2
246,516 - RR42_RS21935 0.19 -0.2
246,610 + RR42_RS21935 0.26 +0.1
246,611 - RR42_RS21935 0.26 -0.3
246,799 + RR42_RS21935 0.40 -0.1
246,799 + RR42_RS21935 0.40 +0.6
246,823 + RR42_RS21935 0.42 -0.0
246,823 + RR42_RS21935 0.42 -0.2
246,823 + RR42_RS21935 0.42 -2.2
246,823 + RR42_RS21935 0.42 +1.3
246,824 - RR42_RS21935 0.42 -3.0
246,824 - RR42_RS21935 0.42 -1.1
246,939 + RR42_RS21935 0.51 -1.7
246,939 + RR42_RS21935 0.51 +0.0
246,940 - RR42_RS21935 0.51 -0.1
247,096 + RR42_RS21935 0.62 -2.2
247,148 + RR42_RS21935 0.66 +0.4
247,149 - RR42_RS21935 0.66 -0.1
247,201 + RR42_RS21935 0.70 +0.1
247,484 + +0.4
247,684 + +0.5
247,771 - +0.8
247,786 - +0.4
247,786 - +0.4
247,786 - -1.5
247,956 + RR42_RS21940 0.16 +0.1
247,957 - RR42_RS21940 0.16 +0.5
248,016 + RR42_RS21940 0.21 -2.0
248,016 + RR42_RS21940 0.21 +1.0
248,017 - RR42_RS21940 0.21 +0.3
248,017 - RR42_RS21940 0.21 -2.4
248,192 - RR42_RS21940 0.36 +0.0
248,194 + RR42_RS21940 0.37 +0.2
248,274 + RR42_RS21940 0.43 -0.3
248,277 + RR42_RS21940 0.44 +1.3
248,277 + RR42_RS21940 0.44 -2.0
248,278 - RR42_RS21940 0.44 +0.1
248,337 + RR42_RS21940 0.49 +0.5
248,337 + RR42_RS21940 0.49 -2.4
248,338 - RR42_RS21940 0.49 -3.0
248,338 - RR42_RS21940 0.49 -0.4
248,397 + RR42_RS21940 0.54 +2.7
248,497 - RR42_RS21940 0.62 +0.8
248,574 + RR42_RS21940 0.69 +0.5
248,575 - RR42_RS21940 0.69 +0.6

Or see this region's nucleotide sequence