Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21555

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21545 and RR42_RS21550 are separated by 197 nucleotidesRR42_RS21550 and RR42_RS21555 are separated by 259 nucleotidesRR42_RS21555 and RR42_RS21560 are separated by 11 nucleotidesRR42_RS21560 and RR42_RS21565 are separated by 120 nucleotides RR42_RS21545: RR42_RS21545 - hypothetical protein, at 160,117 to 160,659 _RS21545 RR42_RS21550: RR42_RS21550 - hypothetical protein, at 160,857 to 161,270 _RS21550 RR42_RS21555: RR42_RS21555 - membrane protein, at 161,530 to 162,519 _RS21555 RR42_RS21560: RR42_RS21560 - hypothetical protein, at 162,531 to 163,229 _RS21560 RR42_RS21565: RR42_RS21565 - hypothetical protein, at 163,350 to 164,309 _RS21565 Position (kb) 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 160.571 kb on + strand, within RR42_RS21545at 160.711 kb on + strandat 160.712 kb on - strandat 160.755 kb on + strandat 160.755 kb on + strandat 160.756 kb on - strandat 160.765 kb on - strandat 160.952 kb on + strand, within RR42_RS21550at 160.980 kb on + strand, within RR42_RS21550at 160.981 kb on - strand, within RR42_RS21550at 160.981 kb on - strand, within RR42_RS21550at 161.011 kb on - strand, within RR42_RS21550at 161.011 kb on - strand, within RR42_RS21550at 161.011 kb on - strand, within RR42_RS21550at 161.012 kb on + strand, within RR42_RS21550at 161.013 kb on - strand, within RR42_RS21550at 161.013 kb on - strand, within RR42_RS21550at 161.013 kb on - strand, within RR42_RS21550at 161.409 kb on + strandat 161.445 kb on - strandat 161.445 kb on - strandat 161.452 kb on - strandat 161.452 kb on - strandat 161.452 kb on - strandat 161.452 kb on - strandat 161.452 kb on - strandat 161.489 kb on - strandat 161.513 kb on + strandat 161.514 kb on - strandat 161.514 kb on - strandat 161.734 kb on + strand, within RR42_RS21555at 161.735 kb on - strand, within RR42_RS21555at 161.831 kb on - strand, within RR42_RS21555at 161.831 kb on - strand, within RR42_RS21555at 161.944 kb on + strand, within RR42_RS21555at 161.944 kb on + strand, within RR42_RS21555at 162.043 kb on + strand, within RR42_RS21555at 162.043 kb on + strand, within RR42_RS21555at 162.043 kb on + strand, within RR42_RS21555at 162.044 kb on - strand, within RR42_RS21555at 162.044 kb on - strand, within RR42_RS21555at 162.044 kb on - strand, within RR42_RS21555at 162.044 kb on - strand, within RR42_RS21555at 162.044 kb on - strand, within RR42_RS21555at 162.278 kb on + strand, within RR42_RS21555at 162.316 kb on + strand, within RR42_RS21555at 162.338 kb on + strand, within RR42_RS21555at 162.387 kb on + strand, within RR42_RS21555at 162.548 kb on - strandat 162.580 kb on + strandat 162.580 kb on + strandat 162.580 kb on + strandat 162.580 kb on + strandat 162.580 kb on + strandat 162.581 kb on - strandat 162.581 kb on - strandat 162.581 kb on - strandat 162.581 kb on - strandat 162.581 kb on - strandat 162.616 kb on + strand, within RR42_RS21560at 162.617 kb on - strand, within RR42_RS21560at 162.678 kb on + strand, within RR42_RS21560at 162.761 kb on + strand, within RR42_RS21560at 162.871 kb on + strand, within RR42_RS21560at 162.872 kb on - strand, within RR42_RS21560at 163.240 kb on + strandat 163.278 kb on + strandat 163.278 kb on + strandat 163.278 kb on + strandat 163.279 kb on - strandat 163.279 kb on - strandat 163.279 kb on - strandat 163.279 kb on - strandat 163.393 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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160,571 + RR42_RS21545 0.84 +0.0
160,711 + +1.7
160,712 - -0.2
160,755 + -0.7
160,755 + -0.7
160,756 - +1.8
160,765 - -1.8
160,952 + RR42_RS21550 0.23 -0.8
160,980 + RR42_RS21550 0.30 -0.0
160,981 - RR42_RS21550 0.30 -3.1
160,981 - RR42_RS21550 0.30 -1.7
161,011 - RR42_RS21550 0.37 +0.8
161,011 - RR42_RS21550 0.37 -0.8
161,011 - RR42_RS21550 0.37 -0.6
161,012 + RR42_RS21550 0.37 +0.7
161,013 - RR42_RS21550 0.38 -0.2
161,013 - RR42_RS21550 0.38 +0.3
161,013 - RR42_RS21550 0.38 +0.5
161,409 + -0.2
161,445 - -1.3
161,445 - -0.2
161,452 - +0.6
161,452 - -0.3
161,452 - -3.1
161,452 - +1.0
161,452 - +1.3
161,489 - +1.2
161,513 + +0.7
161,514 - -1.0
161,514 - -1.9
161,734 + RR42_RS21555 0.21 +0.6
161,735 - RR42_RS21555 0.21 +0.3
161,831 - RR42_RS21555 0.30 -0.9
161,831 - RR42_RS21555 0.30 +0.0
161,944 + RR42_RS21555 0.42 +0.8
161,944 + RR42_RS21555 0.42 +0.6
162,043 + RR42_RS21555 0.52 +1.1
162,043 + RR42_RS21555 0.52 +0.1
162,043 + RR42_RS21555 0.52 -1.1
162,044 - RR42_RS21555 0.52 +0.8
162,044 - RR42_RS21555 0.52 +0.1
162,044 - RR42_RS21555 0.52 -0.9
162,044 - RR42_RS21555 0.52 -0.2
162,044 - RR42_RS21555 0.52 -1.5
162,278 + RR42_RS21555 0.76 -0.6
162,316 + RR42_RS21555 0.79 -2.0
162,338 + RR42_RS21555 0.82 -2.0
162,387 + RR42_RS21555 0.87 -2.1
162,548 - -0.4
162,580 + -1.0
162,580 + -0.6
162,580 + +0.3
162,580 + -0.1
162,580 + -0.7
162,581 - +1.0
162,581 - -1.8
162,581 - +1.0
162,581 - +0.1
162,581 - -0.1
162,616 + RR42_RS21560 0.12 -0.5
162,617 - RR42_RS21560 0.12 -2.4
162,678 + RR42_RS21560 0.21 +1.2
162,761 + RR42_RS21560 0.33 +0.4
162,871 + RR42_RS21560 0.49 +1.9
162,872 - RR42_RS21560 0.49 +0.4
163,240 + +0.5
163,278 + -0.8
163,278 + -1.7
163,278 + +2.5
163,279 - +0.1
163,279 - +0.3
163,279 - -0.5
163,279 - -3.1
163,393 + +0.8

Or see this region's nucleotide sequence