Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21515 and RR42_RS21520 are separated by 226 nucleotides RR42_RS21520 and RR42_RS21525 are separated by 23 nucleotides RR42_RS21525 and RR42_RS21530 are separated by 47 nucleotides
RR42_RS21515: RR42_RS21515 - LysR family transcriptional regulator, at 154,775 to 155,713
_RS21515
RR42_RS21520: RR42_RS21520 - flagellar brake protein, at 155,940 to 156,689
_RS21520
RR42_RS21525: RR42_RS21525 - hypothetical protein, at 156,713 to 157,810
_RS21525
RR42_RS21530: RR42_RS21530 - IclR family transcriptional regulator, at 157,858 to 158,706
_RS21530
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.819 kb on + strand at 155.819 kb on + strand at 155.820 kb on - strand at 155.820 kb on - strand at 155.820 kb on - strand at 155.820 kb on - strand at 156.270 kb on + strand, within RR42_RS21520 at 156.270 kb on + strand, within RR42_RS21520 at 156.271 kb on - strand, within RR42_RS21520 at 156.369 kb on + strand, within RR42_RS21520 at 156.369 kb on + strand, within RR42_RS21520 at 156.369 kb on + strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.370 kb on - strand, within RR42_RS21520 at 156.416 kb on + strand, within RR42_RS21520 at 156.416 kb on + strand, within RR42_RS21520 at 156.763 kb on - strand at 156.763 kb on - strand at 157.046 kb on + strand, within RR42_RS21525 at 157.296 kb on + strand, within RR42_RS21525 at 157.297 kb on - strand, within RR42_RS21525 at 157.297 kb on - strand at 157.402 kb on + strand, within RR42_RS21525 at 157.402 kb on + strand, within RR42_RS21525 at 157.403 kb on - strand, within RR42_RS21525 at 157.403 kb on - strand, within RR42_RS21525 at 157.469 kb on + strand, within RR42_RS21525 at 157.470 kb on - strand, within RR42_RS21525 at 157.470 kb on - strand, within RR42_RS21525 at 157.750 kb on - strand at 157.750 kb on - strand at 157.793 kb on - strand at 157.939 kb on + strand at 157.940 kb on - strand at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.210 kb on + strand, within RR42_RS21530 at 158.210 kb on + strand, within RR42_RS21530 at 158.280 kb on - strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.475 kb on - strand, within RR42_RS21530 at 158.547 kb on + strand, within RR42_RS21530 at 158.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 155,819 + -1.0 155,819 + -0.2 155,820 - +0.2 155,820 - +0.3 155,820 - +0.7 155,820 - -0.5 156,270 + RR42_RS21520 0.44 +1.6 156,270 + RR42_RS21520 0.44 +0.1 156,271 - RR42_RS21520 0.44 +0.3 156,369 + RR42_RS21520 0.57 +1.8 156,369 + RR42_RS21520 0.57 -1.2 156,369 + RR42_RS21520 0.57 -2.0 156,370 - RR42_RS21520 0.57 -1.6 156,370 - RR42_RS21520 0.57 +1.0 156,370 - RR42_RS21520 0.57 -1.7 156,370 - RR42_RS21520 0.57 -0.6 156,370 - RR42_RS21520 0.57 -0.8 156,370 - RR42_RS21520 0.57 +0.3 156,416 + RR42_RS21520 0.63 +1.3 156,416 + RR42_RS21520 0.63 +1.0 156,763 - -1.5 156,763 - +0.9 157,046 + RR42_RS21525 0.30 -0.3 157,296 + RR42_RS21525 0.53 -0.5 157,297 - RR42_RS21525 0.53 +0.3 157,297 - +1.3 157,402 + RR42_RS21525 0.63 -0.6 157,402 + RR42_RS21525 0.63 +0.5 157,403 - RR42_RS21525 0.63 +0.1 157,403 - RR42_RS21525 0.63 -0.6 157,469 + RR42_RS21525 0.69 -2.0 157,470 - RR42_RS21525 0.69 -0.7 157,470 - RR42_RS21525 0.69 -0.9 157,750 - -1.7 157,750 - -1.7 157,793 - -0.5 157,939 + -1.2 157,940 - -2.6 158,054 + RR42_RS21530 0.23 -0.2 158,054 + RR42_RS21530 0.23 +1.5 158,054 + RR42_RS21530 0.23 +1.5 158,054 + RR42_RS21530 0.23 -1.8 158,054 + RR42_RS21530 0.23 -0.2 158,055 - RR42_RS21530 0.23 +0.6 158,055 - RR42_RS21530 0.23 -0.6 158,055 - RR42_RS21530 0.23 +0.8 158,055 - RR42_RS21530 0.23 -1.2 158,055 - RR42_RS21530 0.23 +0.3 158,210 + RR42_RS21530 0.41 +0.6 158,210 + RR42_RS21530 0.41 -0.2 158,280 - RR42_RS21530 0.50 +0.2 158,390 + RR42_RS21530 0.63 -0.8 158,390 + RR42_RS21530 0.63 -2.1 158,390 + RR42_RS21530 0.63 -1.4 158,390 + RR42_RS21530 0.63 +0.1 158,390 + RR42_RS21530 0.63 +0.9 158,390 + RR42_RS21530 0.63 +1.8 158,391 - RR42_RS21530 0.63 +1.9 158,391 - RR42_RS21530 0.63 -2.7 158,391 - RR42_RS21530 0.63 -1.5 158,475 - RR42_RS21530 0.73 +0.0 158,547 + RR42_RS21530 0.81 +0.4 158,748 - +0.8
Or see this region's nucleotide sequence