Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21425 and RR42_RS21430 are separated by 12 nucleotides RR42_RS21430 and RR42_RS21435 are separated by 345 nucleotides RR42_RS21435 and RR42_RS21440 are separated by 222 nucleotides
RR42_RS21425: RR42_RS21425 - hypothetical protein, at 136,106 to 136,963
_RS21425
RR42_RS21430: RR42_RS21430 - alpha-ketoglutarate permease, at 136,976 to 138,286
_RS21430
RR42_RS21435: RR42_RS21435 - hypothetical protein, at 138,632 to 139,015
_RS21435
RR42_RS21440: RR42_RS21440 - DNA-3-methyladenine glycosylase, at 139,238 to 142,051
_RS21440
Position (kb) 136
137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 136.020 kb on + strand at 136.139 kb on + strand at 136.289 kb on + strand, within RR42_RS21425 at 136.289 kb on + strand, within RR42_RS21425 at 136.290 kb on - strand, within RR42_RS21425 at 136.404 kb on - strand, within RR42_RS21425 at 136.436 kb on + strand, within RR42_RS21425 at 136.481 kb on + strand, within RR42_RS21425 at 136.481 kb on + strand, within RR42_RS21425 at 136.481 kb on + strand, within RR42_RS21425 at 136.481 kb on + strand, within RR42_RS21425 at 136.523 kb on + strand, within RR42_RS21425 at 136.523 kb on + strand, within RR42_RS21425 at 136.589 kb on + strand, within RR42_RS21425 at 136.590 kb on - strand, within RR42_RS21425 at 136.590 kb on - strand, within RR42_RS21425 at 136.590 kb on - strand, within RR42_RS21425 at 136.730 kb on + strand, within RR42_RS21425 at 136.730 kb on + strand, within RR42_RS21425 at 136.731 kb on - strand, within RR42_RS21425 at 136.731 kb on - strand, within RR42_RS21425 at 136.732 kb on + strand, within RR42_RS21425 at 136.732 kb on + strand, within RR42_RS21425 at 136.733 kb on - strand, within RR42_RS21425 at 136.995 kb on + strand at 136.996 kb on - strand at 137.059 kb on - strand at 137.064 kb on + strand at 137.065 kb on - strand at 137.065 kb on - strand at 137.065 kb on - strand at 137.065 kb on - strand at 137.110 kb on - strand, within RR42_RS21430 at 137.148 kb on + strand, within RR42_RS21430 at 137.148 kb on + strand, within RR42_RS21430 at 137.148 kb on + strand, within RR42_RS21430 at 137.149 kb on - strand, within RR42_RS21430 at 137.223 kb on + strand, within RR42_RS21430 at 137.224 kb on - strand, within RR42_RS21430 at 137.224 kb on - strand, within RR42_RS21430 at 137.347 kb on + strand, within RR42_RS21430 at 137.347 kb on + strand, within RR42_RS21430 at 137.348 kb on - strand, within RR42_RS21430 at 137.348 kb on - strand, within RR42_RS21430 at 137.348 kb on - strand, within RR42_RS21430 at 137.406 kb on + strand, within RR42_RS21430 at 137.406 kb on + strand, within RR42_RS21430 at 137.406 kb on + strand, within RR42_RS21430 at 137.406 kb on + strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.433 kb on + strand, within RR42_RS21430 at 137.433 kb on + strand, within RR42_RS21430 at 137.433 kb on + strand, within RR42_RS21430 at 137.434 kb on - strand, within RR42_RS21430 at 137.434 kb on - strand, within RR42_RS21430 at 137.485 kb on + strand, within RR42_RS21430 at 137.485 kb on + strand, within RR42_RS21430 at 137.486 kb on - strand, within RR42_RS21430 at 137.486 kb on - strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.500 kb on + strand, within RR42_RS21430 at 137.502 kb on + strand, within RR42_RS21430 at 137.503 kb on - strand, within RR42_RS21430 at 137.503 kb on - strand, within RR42_RS21430 at 137.527 kb on + strand, within RR42_RS21430 at 137.527 kb on + strand, within RR42_RS21430 at 137.530 kb on - strand, within RR42_RS21430 at 137.557 kb on + strand, within RR42_RS21430 at 137.557 kb on + strand, within RR42_RS21430 at 137.557 kb on + strand, within RR42_RS21430 at 137.558 kb on - strand, within RR42_RS21430 at 137.558 kb on - strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.840 kb on - strand, within RR42_RS21430 at 137.840 kb on - strand, within RR42_RS21430 at 137.840 kb on - strand, within RR42_RS21430 at 137.840 kb on - strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.860 kb on - strand, within RR42_RS21430 at 137.937 kb on + strand, within RR42_RS21430 at 137.937 kb on + strand, within RR42_RS21430 at 137.938 kb on - strand, within RR42_RS21430 at 137.938 kb on - strand, within RR42_RS21430 at 138.144 kb on + strand, within RR42_RS21430 at 138.169 kb on - strand at 138.169 kb on - strand at 138.220 kb on - strand at 138.321 kb on + strand at 138.321 kb on + strand at 138.322 kb on - strand at 138.362 kb on + strand at 138.363 kb on - strand at 138.409 kb on + strand at 138.409 kb on + strand at 138.410 kb on - strand at 138.410 kb on - strand at 138.410 kb on - strand at 138.410 kb on - strand at 138.594 kb on + strand at 138.594 kb on + strand at 138.595 kb on - strand at 138.595 kb on - strand at 138.662 kb on + strand at 138.693 kb on + strand, within RR42_RS21435 at 138.771 kb on + strand, within RR42_RS21435 at 138.933 kb on + strand, within RR42_RS21435 at 138.933 kb on + strand, within RR42_RS21435 at 138.997 kb on + strand at 138.998 kb on - strand at 138.998 kb on - strand at 139.026 kb on + strand at 139.026 kb on + strand at 139.026 kb on + strand at 139.026 kb on + strand at 139.026 kb on + strand at 139.027 kb on - strand at 139.027 kb on - strand at 139.027 kb on - strand at 139.027 kb on - strand at 139.027 kb on - strand at 139.029 kb on - strand at 139.029 kb on - strand at 139.029 kb on - strand at 139.038 kb on + strand at 139.051 kb on + strand at 139.101 kb on + strand at 139.101 kb on + strand at 139.101 kb on + strand at 139.102 kb on - strand at 139.102 kb on - strand at 139.154 kb on + strand at 139.154 kb on + strand at 139.154 kb on + strand at 139.154 kb on + strand at 139.155 kb on - strand at 139.155 kb on - strand at 139.155 kb on - strand at 139.232 kb on + strand at 139.232 kb on + strand at 139.281 kb on + strand at 139.281 kb on + strand at 139.281 kb on + strand at 139.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 136,020 + -3.4 136,139 + -0.2 136,289 + RR42_RS21425 0.21 -0.7 136,289 + RR42_RS21425 0.21 +0.2 136,290 - RR42_RS21425 0.21 -0.3 136,404 - RR42_RS21425 0.35 +1.3 136,436 + RR42_RS21425 0.38 +0.3 136,481 + RR42_RS21425 0.44 +1.3 136,481 + RR42_RS21425 0.44 +1.6 136,481 + RR42_RS21425 0.44 -0.9 136,481 + RR42_RS21425 0.44 -0.1 136,523 + RR42_RS21425 0.49 +1.0 136,523 + RR42_RS21425 0.49 -1.5 136,589 + RR42_RS21425 0.56 -0.5 136,590 - RR42_RS21425 0.56 -1.5 136,590 - RR42_RS21425 0.56 +1.5 136,590 - RR42_RS21425 0.56 -0.2 136,730 + RR42_RS21425 0.73 -0.5 136,730 + RR42_RS21425 0.73 -2.0 136,731 - RR42_RS21425 0.73 +0.3 136,731 - RR42_RS21425 0.73 -2.0 136,732 + RR42_RS21425 0.73 +0.1 136,732 + RR42_RS21425 0.73 +1.0 136,733 - RR42_RS21425 0.73 -0.1 136,995 + -0.9 136,996 - -0.0 137,059 - +1.1 137,064 + -0.8 137,065 - -1.2 137,065 - -1.5 137,065 - -2.6 137,065 - +3.7 137,110 - RR42_RS21430 0.10 +0.7 137,148 + RR42_RS21430 0.13 +1.3 137,148 + RR42_RS21430 0.13 +1.6 137,148 + RR42_RS21430 0.13 +0.6 137,149 - RR42_RS21430 0.13 +1.3 137,223 + RR42_RS21430 0.19 +1.2 137,224 - RR42_RS21430 0.19 +0.3 137,224 - RR42_RS21430 0.19 -0.6 137,347 + RR42_RS21430 0.28 +0.1 137,347 + RR42_RS21430 0.28 -0.5 137,348 - RR42_RS21430 0.28 -0.6 137,348 - RR42_RS21430 0.28 -0.0 137,348 - RR42_RS21430 0.28 -0.2 137,406 + RR42_RS21430 0.33 +0.4 137,406 + RR42_RS21430 0.33 +0.2 137,406 + RR42_RS21430 0.33 +3.2 137,406 + RR42_RS21430 0.33 -0.2 137,407 - RR42_RS21430 0.33 -2.0 137,407 - RR42_RS21430 0.33 +0.8 137,407 - RR42_RS21430 0.33 -1.5 137,407 - RR42_RS21430 0.33 -1.4 137,407 - RR42_RS21430 0.33 +0.1 137,407 - RR42_RS21430 0.33 -0.4 137,407 - RR42_RS21430 0.33 -3.2 137,433 + RR42_RS21430 0.35 +1.3 137,433 + RR42_RS21430 0.35 -2.4 137,433 + RR42_RS21430 0.35 +0.3 137,434 - RR42_RS21430 0.35 +0.6 137,434 - RR42_RS21430 0.35 +0.1 137,485 + RR42_RS21430 0.39 -1.1 137,485 + RR42_RS21430 0.39 +1.0 137,486 - RR42_RS21430 0.39 +1.8 137,486 - RR42_RS21430 0.39 +0.1 137,487 + RR42_RS21430 0.39 -0.8 137,487 + RR42_RS21430 0.39 -0.1 137,487 + RR42_RS21430 0.39 -0.8 137,487 + RR42_RS21430 0.39 -0.2 137,487 + RR42_RS21430 0.39 -0.7 137,487 + RR42_RS21430 0.39 -0.9 137,487 + RR42_RS21430 0.39 -2.7 137,487 + RR42_RS21430 0.39 +1.1 137,488 - RR42_RS21430 0.39 +0.3 137,488 - RR42_RS21430 0.39 -1.2 137,488 - RR42_RS21430 0.39 +1.7 137,488 - RR42_RS21430 0.39 -1.2 137,488 - RR42_RS21430 0.39 -0.8 137,500 + RR42_RS21430 0.40 -3.0 137,502 + RR42_RS21430 0.40 +0.3 137,503 - RR42_RS21430 0.40 -2.7 137,503 - RR42_RS21430 0.40 -1.2 137,527 + RR42_RS21430 0.42 -0.5 137,527 + RR42_RS21430 0.42 -0.3 137,530 - RR42_RS21430 0.42 -3.0 137,557 + RR42_RS21430 0.44 +0.2 137,557 + RR42_RS21430 0.44 -2.5 137,557 + RR42_RS21430 0.44 +0.6 137,558 - RR42_RS21430 0.44 +0.0 137,558 - RR42_RS21430 0.44 +0.3 137,839 + RR42_RS21430 0.66 +0.2 137,839 + RR42_RS21430 0.66 -0.2 137,839 + RR42_RS21430 0.66 +0.3 137,839 + RR42_RS21430 0.66 +1.9 137,839 + RR42_RS21430 0.66 -2.2 137,839 + RR42_RS21430 0.66 +1.1 137,840 - RR42_RS21430 0.66 -0.9 137,840 - RR42_RS21430 0.66 -2.8 137,840 - RR42_RS21430 0.66 -1.0 137,840 - RR42_RS21430 0.66 +1.5 137,841 + RR42_RS21430 0.66 -0.3 137,841 + RR42_RS21430 0.66 -1.9 137,841 + RR42_RS21430 0.66 -2.4 137,841 + RR42_RS21430 0.66 -1.5 137,841 + RR42_RS21430 0.66 +1.0 137,841 + RR42_RS21430 0.66 +0.3 137,842 - RR42_RS21430 0.66 -0.7 137,842 - RR42_RS21430 0.66 +0.1 137,842 - RR42_RS21430 0.66 +1.3 137,842 - RR42_RS21430 0.66 -0.0 137,842 - RR42_RS21430 0.66 +0.5 137,860 - RR42_RS21430 0.67 +1.3 137,937 + RR42_RS21430 0.73 +0.5 137,937 + RR42_RS21430 0.73 +0.3 137,938 - RR42_RS21430 0.73 -0.7 137,938 - RR42_RS21430 0.73 -0.5 138,144 + RR42_RS21430 0.89 -1.0 138,169 - -0.4 138,169 - +0.7 138,220 - -1.5 138,321 + -0.4 138,321 + -1.0 138,322 - +1.2 138,362 + -0.1 138,363 - +0.4 138,409 + +0.1 138,409 + +1.5 138,410 - -1.0 138,410 - -2.7 138,410 - -1.2 138,410 - -0.5 138,594 + +0.2 138,594 + -0.5 138,595 - +1.2 138,595 - -0.0 138,662 + -0.7 138,693 + RR42_RS21435 0.16 -1.0 138,771 + RR42_RS21435 0.36 -3.4 138,933 + RR42_RS21435 0.78 -1.4 138,933 + RR42_RS21435 0.78 -0.9 138,997 + +0.5 138,998 - -2.0 138,998 - -0.7 139,026 + -1.5 139,026 + -1.2 139,026 + -1.5 139,026 + -0.9 139,026 + +0.3 139,027 - -2.0 139,027 - -1.5 139,027 - +0.3 139,027 - -0.8 139,027 - -1.2 139,029 - +0.3 139,029 - +0.2 139,029 - +2.3 139,038 + -3.0 139,051 + +0.9 139,101 + +0.3 139,101 + +1.0 139,101 + +0.3 139,102 - -0.4 139,102 - +0.4 139,154 + -3.2 139,154 + -1.5 139,154 + -0.4 139,154 + -0.1 139,155 - +1.1 139,155 - +0.8 139,155 - +0.3 139,232 + +1.6 139,232 + -2.0 139,281 + +1.5 139,281 + -2.2 139,281 + +0.0 139,282 - -0.2
Or see this region's nucleotide sequence