Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21420

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21410 and RR42_RS21415 are separated by 144 nucleotidesRR42_RS21415 and RR42_RS21420 are separated by 160 nucleotidesRR42_RS21420 and RR42_RS21425 are separated by 149 nucleotides RR42_RS21410: RR42_RS21410 - DNA-binding protein, at 133,775 to 134,095 _RS21410 RR42_RS21415: RR42_RS21415 - hypothetical protein, at 134,240 to 134,638 _RS21415 RR42_RS21420: RR42_RS21420 - acyl-CoA dehydrogenase, at 134,799 to 135,956 _RS21420 RR42_RS21425: RR42_RS21425 - hypothetical protein, at 136,106 to 136,963 _RS21425 Position (kb) 134 135 136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 133.861 kb on + strand, within RR42_RS21410at 133.862 kb on - strand, within RR42_RS21410at 133.862 kb on - strand, within RR42_RS21410at 133.892 kb on + strand, within RR42_RS21410at 133.892 kb on + strand, within RR42_RS21410at 133.892 kb on + strand, within RR42_RS21410at 133.893 kb on - strand, within RR42_RS21410at 133.893 kb on - strand, within RR42_RS21410at 133.997 kb on + strand, within RR42_RS21410at 134.060 kb on - strand, within RR42_RS21410at 134.321 kb on + strand, within RR42_RS21415at 134.321 kb on + strand, within RR42_RS21415at 134.420 kb on + strand, within RR42_RS21415at 134.420 kb on + strand, within RR42_RS21415at 134.421 kb on - strand, within RR42_RS21415at 134.421 kb on - strand, within RR42_RS21415at 134.422 kb on + strand, within RR42_RS21415at 134.422 kb on + strand, within RR42_RS21415at 134.423 kb on - strand, within RR42_RS21415at 134.423 kb on - strand, within RR42_RS21415at 134.423 kb on - strand, within RR42_RS21415at 134.423 kb on - strand, within RR42_RS21415at 134.606 kb on - strandat 134.707 kb on - strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.756 kb on - strandat 134.756 kb on - strandat 134.756 kb on - strandat 134.756 kb on - strandat 134.756 kb on - strandat 134.970 kb on + strand, within RR42_RS21420at 134.970 kb on + strand, within RR42_RS21420at 134.971 kb on - strand, within RR42_RS21420at 134.971 kb on - strand, within RR42_RS21420at 134.971 kb on - strand, within RR42_RS21420at 135.015 kb on + strand, within RR42_RS21420at 135.015 kb on + strand, within RR42_RS21420at 135.015 kb on + strand, within RR42_RS21420at 135.016 kb on - strand, within RR42_RS21420at 135.016 kb on - strand, within RR42_RS21420at 135.016 kb on - strand, within RR42_RS21420at 135.123 kb on + strand, within RR42_RS21420at 135.123 kb on + strand, within RR42_RS21420at 135.237 kb on + strand, within RR42_RS21420at 135.237 kb on + strand, within RR42_RS21420at 135.238 kb on - strand, within RR42_RS21420at 135.238 kb on - strand, within RR42_RS21420at 135.293 kb on + strand, within RR42_RS21420at 135.530 kb on + strand, within RR42_RS21420at 135.531 kb on - strand, within RR42_RS21420at 135.570 kb on - strand, within RR42_RS21420at 135.585 kb on + strand, within RR42_RS21420at 135.586 kb on - strand, within RR42_RS21420at 135.586 kb on - strand, within RR42_RS21420at 135.656 kb on + strand, within RR42_RS21420at 135.672 kb on + strand, within RR42_RS21420at 135.840 kb on + strand, within RR42_RS21420at 135.840 kb on + strand, within RR42_RS21420at 135.841 kb on - strandat 135.842 kb on + strandat 135.842 kb on + strandat 135.843 kb on - strandat 135.853 kb on - strandat 135.881 kb on - strandat 135.881 kb on - strandat 135.898 kb on - strandat 136.020 kb on + strandat 136.139 kb on + strandat 136.289 kb on + strand, within RR42_RS21425at 136.289 kb on + strand, within RR42_RS21425at 136.290 kb on - strand, within RR42_RS21425at 136.404 kb on - strand, within RR42_RS21425at 136.436 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.523 kb on + strand, within RR42_RS21425at 136.523 kb on + strand, within RR42_RS21425at 136.589 kb on + strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.730 kb on + strand, within RR42_RS21425at 136.730 kb on + strand, within RR42_RS21425at 136.731 kb on - strand, within RR42_RS21425at 136.731 kb on - strand, within RR42_RS21425at 136.732 kb on + strand, within RR42_RS21425at 136.732 kb on + strand, within RR42_RS21425at 136.733 kb on - strand, within RR42_RS21425

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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133,861 + RR42_RS21410 0.27 -2.0
133,862 - RR42_RS21410 0.27 +0.7
133,862 - RR42_RS21410 0.27 -2.2
133,892 + RR42_RS21410 0.36 -0.8
133,892 + RR42_RS21410 0.36 -0.8
133,892 + RR42_RS21410 0.36 +2.3
133,893 - RR42_RS21410 0.37 +0.0
133,893 - RR42_RS21410 0.37 -1.5
133,997 + RR42_RS21410 0.69 +0.3
134,060 - RR42_RS21410 0.89 +1.8
134,321 + RR42_RS21415 0.20 -0.1
134,321 + RR42_RS21415 0.20 +0.9
134,420 + RR42_RS21415 0.45 +2.3
134,420 + RR42_RS21415 0.45 -0.8
134,421 - RR42_RS21415 0.45 -0.7
134,421 - RR42_RS21415 0.45 +0.5
134,422 + RR42_RS21415 0.46 +0.4
134,422 + RR42_RS21415 0.46 +0.1
134,423 - RR42_RS21415 0.46 +1.7
134,423 - RR42_RS21415 0.46 +0.8
134,423 - RR42_RS21415 0.46 -1.7
134,423 - RR42_RS21415 0.46 -2.6
134,606 - -0.0
134,707 - -1.1
134,755 + -0.3
134,755 + +0.6
134,755 + -0.4
134,755 + -0.1
134,755 + +0.4
134,755 + +2.3
134,755 + +0.9
134,755 + -0.8
134,756 - -0.5
134,756 - -0.2
134,756 - +1.5
134,756 - -0.6
134,756 - +0.1
134,970 + RR42_RS21420 0.15 -2.1
134,970 + RR42_RS21420 0.15 -4.0
134,971 - RR42_RS21420 0.15 -0.9
134,971 - RR42_RS21420 0.15 -2.1
134,971 - RR42_RS21420 0.15 +0.9
135,015 + RR42_RS21420 0.19 -2.5
135,015 + RR42_RS21420 0.19 -0.7
135,015 + RR42_RS21420 0.19 +2.2
135,016 - RR42_RS21420 0.19 -0.8
135,016 - RR42_RS21420 0.19 +0.3
135,016 - RR42_RS21420 0.19 -1.5
135,123 + RR42_RS21420 0.28 -0.4
135,123 + RR42_RS21420 0.28 -0.2
135,237 + RR42_RS21420 0.38 -1.0
135,237 + RR42_RS21420 0.38 -1.0
135,238 - RR42_RS21420 0.38 +0.6
135,238 - RR42_RS21420 0.38 -0.2
135,293 + RR42_RS21420 0.43 +0.6
135,530 + RR42_RS21420 0.63 +1.0
135,531 - RR42_RS21420 0.63 -0.4
135,570 - RR42_RS21420 0.67 +1.8
135,585 + RR42_RS21420 0.68 -1.7
135,586 - RR42_RS21420 0.68 +0.8
135,586 - RR42_RS21420 0.68 -0.9
135,656 + RR42_RS21420 0.74 -3.1
135,672 + RR42_RS21420 0.75 +0.2
135,840 + RR42_RS21420 0.90 -0.1
135,840 + RR42_RS21420 0.90 -1.0
135,841 - -0.7
135,842 + +1.3
135,842 + -2.5
135,843 - +0.1
135,853 - +0.7
135,881 - -0.4
135,881 - -0.2
135,898 - +1.0
136,020 + -3.4
136,139 + -0.2
136,289 + RR42_RS21425 0.21 -0.7
136,289 + RR42_RS21425 0.21 +0.2
136,290 - RR42_RS21425 0.21 -0.3
136,404 - RR42_RS21425 0.35 +1.3
136,436 + RR42_RS21425 0.38 +0.3
136,481 + RR42_RS21425 0.44 +1.3
136,481 + RR42_RS21425 0.44 +1.6
136,481 + RR42_RS21425 0.44 -0.9
136,481 + RR42_RS21425 0.44 -0.1
136,523 + RR42_RS21425 0.49 +1.0
136,523 + RR42_RS21425 0.49 -1.5
136,589 + RR42_RS21425 0.56 -0.5
136,590 - RR42_RS21425 0.56 -1.5
136,590 - RR42_RS21425 0.56 +1.5
136,590 - RR42_RS21425 0.56 -0.2
136,730 + RR42_RS21425 0.73 -0.5
136,730 + RR42_RS21425 0.73 -2.0
136,731 - RR42_RS21425 0.73 +0.3
136,731 - RR42_RS21425 0.73 -2.0
136,732 + RR42_RS21425 0.73 +0.1
136,732 + RR42_RS21425 0.73 +1.0
136,733 - RR42_RS21425 0.73 -0.1

Or see this region's nucleotide sequence