Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21360

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21355 and RR42_RS21360 overlap by 4 nucleotidesRR42_RS21360 and RR42_RS21365 are separated by 19 nucleotides RR42_RS21355: RR42_RS21355 - ABC transporter permease, at 120,388 to 121,392 _RS21355 RR42_RS21360: RR42_RS21360 - ABC transporter permease, at 121,389 to 122,228 _RS21360 RR42_RS21365: RR42_RS21365 - ABC transporter ATP-binding protein, at 122,248 to 123,885 _RS21365 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1at 120.640 kb on + strand, within RR42_RS21355at 120.830 kb on - strand, within RR42_RS21355at 121.016 kb on - strand, within RR42_RS21355at 121.016 kb on - strand, within RR42_RS21355at 121.150 kb on - strand, within RR42_RS21355at 121.411 kb on - strandat 121.803 kb on + strand, within RR42_RS21360at 121.804 kb on - strand, within RR42_RS21360at 122.268 kb on - strandat 122.348 kb on - strandat 122.348 kb on - strandat 122.444 kb on - strand, within RR42_RS21365at 122.709 kb on + strand, within RR42_RS21365at 122.710 kb on - strand, within RR42_RS21365at 122.714 kb on - strand, within RR42_RS21365at 123.010 kb on + strand, within RR42_RS21365

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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120,640 + RR42_RS21355 0.25 -2.4
120,830 - RR42_RS21355 0.44 -0.9
121,016 - RR42_RS21355 0.62 -0.1
121,016 - RR42_RS21355 0.62 +1.1
121,150 - RR42_RS21355 0.76 +0.6
121,411 - -1.3
121,803 + RR42_RS21360 0.49 -0.5
121,804 - RR42_RS21360 0.49 -0.4
122,268 - -0.2
122,348 - -2.8
122,348 - -0.8
122,444 - RR42_RS21365 0.12 -2.1
122,709 + RR42_RS21365 0.28 +0.5
122,710 - RR42_RS21365 0.28 +0.3
122,714 - RR42_RS21365 0.28 -2.0
123,010 + RR42_RS21365 0.47 -2.4

Or see this region's nucleotide sequence