Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21145 and RR42_RS21150 overlap by 4 nucleotides RR42_RS21150 and RR42_RS21155 are separated by 101 nucleotides
RR42_RS21145: RR42_RS21145 - hypothetical protein, at 69,066 to 70,427
_RS21145
RR42_RS21150: RR42_RS21150 - hypothetical protein, at 70,424 to 70,780
_RS21150
RR42_RS21155: RR42_RS21155 - ABC transporter substrate-binding protein, at 70,882 to 71,868
_RS21155
Position (kb) 70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.802 kb on + strand, within RR42_RS21145 at 69.803 kb on - strand, within RR42_RS21145 at 69.803 kb on - strand, within RR42_RS21145 at 69.889 kb on - strand, within RR42_RS21145 at 70.014 kb on + strand, within RR42_RS21145 at 70.015 kb on - strand, within RR42_RS21145 at 70.015 kb on - strand, within RR42_RS21145 at 70.015 kb on - strand, within RR42_RS21145 at 70.234 kb on + strand, within RR42_RS21145 at 70.308 kb on + strand at 70.308 kb on + strand at 70.309 kb on - strand at 70.461 kb on - strand, within RR42_RS21150 at 70.620 kb on - strand, within RR42_RS21150 at 70.702 kb on + strand, within RR42_RS21150 at 70.823 kb on - strand at 70.833 kb on - strand at 70.891 kb on + strand at 70.892 kb on - strand at 70.892 kb on - strand at 71.064 kb on + strand, within RR42_RS21155 at 71.122 kb on - strand, within RR42_RS21155 at 71.162 kb on - strand, within RR42_RS21155 at 71.162 kb on - strand, within RR42_RS21155 at 71.164 kb on - strand, within RR42_RS21155 at 71.164 kb on - strand, within RR42_RS21155 at 71.227 kb on + strand, within RR42_RS21155 at 71.245 kb on + strand, within RR42_RS21155 at 71.245 kb on + strand, within RR42_RS21155 at 71.245 kb on + strand, within RR42_RS21155 at 71.245 kb on + strand, within RR42_RS21155 at 71.246 kb on - strand, within RR42_RS21155 at 71.246 kb on - strand, within RR42_RS21155 at 71.246 kb on - strand, within RR42_RS21155 at 71.246 kb on - strand, within RR42_RS21155 at 71.447 kb on - strand, within RR42_RS21155 at 71.633 kb on - strand, within RR42_RS21155 at 71.644 kb on + strand, within RR42_RS21155 at 71.644 kb on + strand, within RR42_RS21155 at 71.645 kb on - strand, within RR42_RS21155 at 71.749 kb on + strand, within RR42_RS21155 at 71.750 kb on - strand, within RR42_RS21155
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 69,802 + RR42_RS21145 0.54 -1.0 69,803 - RR42_RS21145 0.54 -3.4 69,803 - RR42_RS21145 0.54 +1.0 69,889 - RR42_RS21145 0.60 +2.2 70,014 + RR42_RS21145 0.70 -0.4 70,015 - RR42_RS21145 0.70 -0.2 70,015 - RR42_RS21145 0.70 +1.4 70,015 - RR42_RS21145 0.70 +1.5 70,234 + RR42_RS21145 0.86 -0.8 70,308 + -0.4 70,308 + +0.1 70,309 - -0.8 70,461 - RR42_RS21150 0.10 -0.2 70,620 - RR42_RS21150 0.55 -2.7 70,702 + RR42_RS21150 0.78 -0.5 70,823 - +2.0 70,833 - -0.5 70,891 + +1.1 70,892 - +1.1 70,892 - +1.3 71,064 + RR42_RS21155 0.18 -1.0 71,122 - RR42_RS21155 0.24 -0.7 71,162 - RR42_RS21155 0.28 +1.7 71,162 - RR42_RS21155 0.28 -0.7 71,164 - RR42_RS21155 0.29 -0.3 71,164 - RR42_RS21155 0.29 +0.8 71,227 + RR42_RS21155 0.35 -0.1 71,245 + RR42_RS21155 0.37 +0.9 71,245 + RR42_RS21155 0.37 -2.1 71,245 + RR42_RS21155 0.37 -1.6 71,245 + RR42_RS21155 0.37 +0.9 71,246 - RR42_RS21155 0.37 +0.4 71,246 - RR42_RS21155 0.37 -2.7 71,246 - RR42_RS21155 0.37 +1.6 71,246 - RR42_RS21155 0.37 +0.3 71,447 - RR42_RS21155 0.57 +1.2 71,633 - RR42_RS21155 0.76 +0.1 71,644 + RR42_RS21155 0.77 -1.5 71,644 + RR42_RS21155 0.77 +0.8 71,645 - RR42_RS21155 0.77 +0.0 71,749 + RR42_RS21155 0.88 -3.1 71,750 - RR42_RS21155 0.88 +0.5
Or see this region's nucleotide sequence