Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20935 and RR42_RS20940 are separated by 87 nucleotides RR42_RS20940 and RR42_RS20945 overlap by 4 nucleotides RR42_RS20945 and RR42_RS20950 are separated by 11 nucleotides
RR42_RS20935: RR42_RS20935 - hydrolase, at 22,122 to 23,990
_RS20935
RR42_RS20940: RR42_RS20940 - tyrosine protein kinase, at 24,078 to 26,321
_RS20940
RR42_RS20945: RR42_RS20945 - protein-tyrosine phosphatase, at 26,318 to 26,782
_RS20945
RR42_RS20950: RR42_RS20950 - multidrug MFS transporter, at 26,794 to 27,888
_RS20950
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.241 kb on + strand, within RR42_RS20935 at 23.302 kb on - strand, within RR42_RS20935 at 23.470 kb on - strand, within RR42_RS20935 at 23.700 kb on + strand, within RR42_RS20935 at 23.865 kb on + strand at 23.865 kb on + strand at 23.866 kb on - strand at 23.969 kb on - strand at 24.115 kb on + strand at 24.115 kb on + strand at 24.116 kb on - strand at 24.130 kb on + strand at 24.130 kb on + strand at 24.131 kb on - strand at 24.146 kb on - strand at 24.364 kb on + strand, within RR42_RS20940 at 24.365 kb on - strand, within RR42_RS20940 at 24.564 kb on - strand, within RR42_RS20940 at 24.847 kb on + strand, within RR42_RS20940 at 24.847 kb on + strand, within RR42_RS20940 at 24.848 kb on - strand, within RR42_RS20940 at 24.848 kb on - strand, within RR42_RS20940 at 24.875 kb on + strand, within RR42_RS20940 at 24.974 kb on + strand, within RR42_RS20940 at 25.682 kb on + strand, within RR42_RS20940 at 25.856 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.924 kb on + strand, within RR42_RS20940 at 25.925 kb on - strand, within RR42_RS20940 at 25.957 kb on + strand, within RR42_RS20940 at 25.958 kb on - strand, within RR42_RS20940 at 26.324 kb on + strand at 26.419 kb on + strand, within RR42_RS20945 at 26.419 kb on + strand, within RR42_RS20945 at 26.420 kb on - strand, within RR42_RS20945 at 26.420 kb on - strand, within RR42_RS20945 at 26.638 kb on + strand, within RR42_RS20945 at 26.892 kb on - strand at 26.967 kb on - strand, within RR42_RS20950 at 27.109 kb on + strand, within RR42_RS20950 at 27.109 kb on + strand, within RR42_RS20950 at 27.110 kb on - strand, within RR42_RS20950
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 23,241 + RR42_RS20935 0.60 +0.2 23,302 - RR42_RS20935 0.63 +1.1 23,470 - RR42_RS20935 0.72 +0.9 23,700 + RR42_RS20935 0.84 -0.0 23,865 + -0.0 23,865 + -1.0 23,866 - -1.4 23,969 - +0.0 24,115 + -0.4 24,115 + -1.0 24,116 - +0.1 24,130 + +0.3 24,130 + -0.2 24,131 - +0.3 24,146 - -0.2 24,364 + RR42_RS20940 0.13 +1.9 24,365 - RR42_RS20940 0.13 -0.1 24,564 - RR42_RS20940 0.22 -2.0 24,847 + RR42_RS20940 0.34 -0.7 24,847 + RR42_RS20940 0.34 -1.2 24,848 - RR42_RS20940 0.34 -1.5 24,848 - RR42_RS20940 0.34 +0.4 24,875 + RR42_RS20940 0.36 +0.8 24,974 + RR42_RS20940 0.40 +1.1 25,682 + RR42_RS20940 0.71 -1.0 25,856 + RR42_RS20940 0.79 +0.2 25,924 + RR42_RS20940 0.82 -0.3 25,924 + RR42_RS20940 0.82 -1.7 25,924 + RR42_RS20940 0.82 +1.3 25,925 - RR42_RS20940 0.82 +1.2 25,957 + RR42_RS20940 0.84 +2.0 25,958 - RR42_RS20940 0.84 -0.7 26,324 + -0.0 26,419 + RR42_RS20945 0.22 -1.1 26,419 + RR42_RS20945 0.22 -1.0 26,420 - RR42_RS20945 0.22 +2.0 26,420 - RR42_RS20945 0.22 -1.8 26,638 + RR42_RS20945 0.69 +1.6 26,892 - -2.0 26,967 - RR42_RS20950 0.16 +0.2 27,109 + RR42_RS20950 0.29 +1.2 27,109 + RR42_RS20950 0.29 +0.5 27,110 - RR42_RS20950 0.29 +0.3
Or see this region's nucleotide sequence