Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20395 and RR42_RS20400 are separated by 175 nucleotides RR42_RS20400 and RR42_RS20405 are separated by 47 nucleotides RR42_RS20405 and RR42_RS20410 are separated by 241 nucleotides
RR42_RS20395: RR42_RS20395 - membrane protein, at 4,417,130 to 4,418,098
_RS20395
RR42_RS20400: RR42_RS20400 - aldolase, at 4,418,274 to 4,419,038
_RS20400
RR42_RS20405: RR42_RS20405 - 2-dehydropantoate 2-reductase, at 4,419,086 to 4,420,069
_RS20405
RR42_RS20410: RR42_RS20410 - transporter, at 4,420,311 to 4,421,201
_RS20410
Position (kb) 4419
4420
4421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4418.116 kb on + strand at 4418.192 kb on + strand at 4418.192 kb on + strand at 4418.192 kb on + strand at 4418.334 kb on + strand at 4418.373 kb on + strand, within RR42_RS20400 at 4418.373 kb on + strand, within RR42_RS20400 at 4418.374 kb on - strand, within RR42_RS20400 at 4418.374 kb on - strand, within RR42_RS20400 at 4418.671 kb on - strand, within RR42_RS20400 at 4418.671 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.720 kb on + strand, within RR42_RS20400 at 4418.720 kb on + strand, within RR42_RS20400 at 4418.803 kb on + strand, within RR42_RS20400 at 4418.879 kb on + strand, within RR42_RS20400 at 4418.879 kb on + strand, within RR42_RS20400 at 4418.880 kb on - strand, within RR42_RS20400 at 4419.057 kb on - strand at 4419.096 kb on + strand at 4419.096 kb on + strand at 4419.096 kb on + strand at 4419.097 kb on - strand at 4419.097 kb on - strand at 4419.282 kb on + strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.286 kb on + strand, within RR42_RS20405 at 4419.286 kb on + strand, within RR42_RS20405 at 4419.533 kb on - strand, within RR42_RS20405 at 4419.718 kb on + strand, within RR42_RS20405 at 4419.718 kb on + strand, within RR42_RS20405 at 4419.719 kb on - strand, within RR42_RS20405 at 4420.064 kb on + strand at 4420.191 kb on - strand at 4420.443 kb on + strand, within RR42_RS20410 at 4420.477 kb on + strand, within RR42_RS20410 at 4420.478 kb on - strand, within RR42_RS20410 at 4420.509 kb on - strand, within RR42_RS20410 at 4420.509 kb on - strand, within RR42_RS20410 at 4420.630 kb on + strand, within RR42_RS20410 at 4420.631 kb on - strand, within RR42_RS20410 at 4420.863 kb on + strand at 4420.864 kb on - strand, within RR42_RS20410 at 4420.864 kb on - strand, within RR42_RS20410 at 4420.900 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.949 kb on - strand, within RR42_RS20410
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 4,418,116 + -0.8 4,418,192 + -0.4 4,418,192 + -0.7 4,418,192 + +1.5 4,418,334 + +0.3 4,418,373 + RR42_RS20400 0.13 +0.4 4,418,373 + RR42_RS20400 0.13 +0.6 4,418,374 - RR42_RS20400 0.13 -0.8 4,418,374 - RR42_RS20400 0.13 +0.8 4,418,671 - RR42_RS20400 0.52 -0.8 4,418,671 - RR42_RS20400 0.52 -2.3 4,418,701 - RR42_RS20400 0.56 +1.4 4,418,701 - RR42_RS20400 0.56 +0.4 4,418,701 - RR42_RS20400 0.56 +0.8 4,418,720 + RR42_RS20400 0.58 -0.5 4,418,720 + RR42_RS20400 0.58 -0.3 4,418,803 + RR42_RS20400 0.69 +0.8 4,418,879 + RR42_RS20400 0.79 +0.7 4,418,879 + RR42_RS20400 0.79 +0.1 4,418,880 - RR42_RS20400 0.79 -0.5 4,419,057 - +1.8 4,419,096 + +2.4 4,419,096 + -2.5 4,419,096 + -3.1 4,419,097 - -2.2 4,419,097 - +0.5 4,419,282 + RR42_RS20405 0.20 +1.4 4,419,283 - RR42_RS20405 0.20 -1.7 4,419,283 - RR42_RS20405 0.20 +0.5 4,419,283 - RR42_RS20405 0.20 +0.8 4,419,286 + RR42_RS20405 0.20 +0.2 4,419,286 + RR42_RS20405 0.20 -0.6 4,419,533 - RR42_RS20405 0.45 -0.1 4,419,718 + RR42_RS20405 0.64 -0.6 4,419,718 + RR42_RS20405 0.64 +1.5 4,419,719 - RR42_RS20405 0.64 +1.3 4,420,064 + +0.3 4,420,191 - +0.5 4,420,443 + RR42_RS20410 0.15 -2.6 4,420,477 + RR42_RS20410 0.19 -0.9 4,420,478 - RR42_RS20410 0.19 -0.5 4,420,509 - RR42_RS20410 0.22 +0.3 4,420,509 - RR42_RS20410 0.22 -0.6 4,420,630 + RR42_RS20410 0.36 -2.3 4,420,631 - RR42_RS20410 0.36 -0.5 4,420,863 + +1.5 4,420,864 - RR42_RS20410 0.62 -1.1 4,420,864 - RR42_RS20410 0.62 +1.7 4,420,900 + RR42_RS20410 0.66 +0.9 4,420,948 + RR42_RS20410 0.71 -1.4 4,420,948 + RR42_RS20410 0.71 -1.5 4,420,948 + RR42_RS20410 0.71 -2.6 4,420,949 - RR42_RS20410 0.72 -0.8
Or see this region's nucleotide sequence