Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20080

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
4,338,665	+				+0.8
4,338,798	+				-0.3
4,338,798	+				+0.8
4,338,798	+				+0.2
4,338,798	+				-0.6
4,338,798	+				+0.2
4,338,799	-				+0.5
4,338,799	-				+1.2
4,338,850	-				-1.3
4,338,882	+				-1.8
4,338,927	+				-0.4
4,338,927	+				-0.2
4,338,928	-				+0.1
4,338,939	+				-0.1
4,338,939	+				-0.3
4,338,940	-				+1.0
4,339,165	+		RR42_RS20075	0.20	-0.6
4,339,166	-		RR42_RS20075	0.20	+0.0
4,339,166	-		RR42_RS20075	0.20	-1.7
4,339,166	-		RR42_RS20075	0.20	-1.3
4,339,166	-		RR42_RS20075	0.20	-0.1
4,339,353	+		RR42_RS20075	0.55	+0.2
4,339,353	+		RR42_RS20075	0.55	+0.5
4,339,354	-		RR42_RS20075	0.55	+1.2
4,339,625	+				-0.1
4,339,779	+		RR42_RS20080	0.11	+1.0
4,339,779	+		RR42_RS20080	0.11	+0.6
4,339,779	+		RR42_RS20080	0.11	-0.5
4,339,780	-		RR42_RS20080	0.11	-1.5
4,339,780	-		RR42_RS20080	0.11	+0.4
4,339,780	-		RR42_RS20080	0.11	-2.4
4,340,061	+		RR42_RS20080	0.31	-2.2
4,340,061	+		RR42_RS20080	0.31	-1.5
4,340,108	+		RR42_RS20080	0.35	-0.8
4,340,108	+		RR42_RS20080	0.35	-0.0
4,340,115	-		RR42_RS20080	0.35	-2.6
4,340,419	+		RR42_RS20080	0.57	+0.5
4,340,439	+		RR42_RS20080	0.59	-0.5
4,340,439	+		RR42_RS20080	0.59	-0.8
4,340,439	+		RR42_RS20080	0.59	-0.4
4,340,535	+		RR42_RS20080	0.66	-0.0
4,340,535	+		RR42_RS20080	0.66	-1.6
4,340,536	-		RR42_RS20080	0.66	-0.5
4,340,536	-		RR42_RS20080	0.66	+0.3
4,340,536	-		RR42_RS20080	0.66	+0.3
4,340,536	-		RR42_RS20080	0.66	-2.0
4,340,538	+		RR42_RS20080	0.66	-1.1
4,340,538	+		RR42_RS20080	0.66	-0.7
4,340,539	-		RR42_RS20080	0.66	-0.9
4,340,539	-		RR42_RS20080	0.66	-2.5
4,340,616	+		RR42_RS20080	0.72	-0.9
4,340,616	+		RR42_RS20080	0.72	-0.5
4,340,617	-		RR42_RS20080	0.72	-2.5
4,340,617	-		RR42_RS20080	0.72	-2.1
4,340,617	-		RR42_RS20080	0.72	-0.2
4,340,892	+				-0.8
4,340,892	+				+0.0
4,340,892	+				-1.5
4,340,892	+				-0.5
4,340,892	+				-0.9
4,340,892	+				+0.7
4,340,892	+				-2.6
4,340,892	+				-1.3
4,340,893	-				+0.3
4,340,893	-				+0.1
4,340,893	-				-0.7
4,340,893	-				+0.1
4,340,893	-				+1.9
4,340,893	-				-0.2
4,340,893	-				+0.8
4,340,956	-				+0.2
4,341,044	+				-0.8
4,341,045	-				-2.5
4,341,045	-				-0.2
4,341,045	-				-0.3
4,341,061	+				+1.7
4,341,119	-				-0.5
4,341,154	+		RR42_RS20085	0.18	-0.4
4,341,155	-		RR42_RS20085	0.18	-1.4
4,341,155	-		RR42_RS20085	0.18	-0.2
4,341,155	-		RR42_RS20085	0.18	+1.2
4,341,155	-		RR42_RS20085	0.18	-3.1
4,341,155	-		RR42_RS20085	0.18	-0.1
4,341,157	+		RR42_RS20085	0.19	+0.5
4,341,157	+		RR42_RS20085	0.19	+0.5
4,341,158	-		RR42_RS20085	0.19	-1.2
4,341,367	+		RR42_RS20085	0.83	+0.0
4,341,367	+		RR42_RS20085	0.83	-0.2
4,341,367	+		RR42_RS20085	0.83	-0.5
4,341,368	-		RR42_RS20085	0.84	+0.3
4,341,368	-		RR42_RS20085	0.84	-1.1
4,341,441	-				-0.6
4,341,447	+				+1.0
4,341,447	+				+0.9
4,341,448	-				+1.5
4,341,448	-				+0.1
4,341,448	-				-1.7
4,341,448	-				-0.2
4,341,517	+				-1.7
4,341,517	+				-0.3
4,341,517	+				+0.7
4,341,517	+				+0.7
4,341,517	+				-1.4
4,341,518	-				-0.4
4,341,518	-				-2.3
4,341,518	-				+0.4
4,341,518	-				+0.3
4,341,523	+				-0.2
4,341,523	+				-0.3
4,341,523	+				-1.2
4,341,523	+				-0.4
4,341,523	+				-0.2
4,341,523	+				-0.9
4,341,524	-				+0.1
4,341,524	-				-0.4
4,341,524	-				-1.6
4,341,524	-				-0.1
4,341,705	+		RR42_RS20090	0.31	-0.6
4,341,835	+		RR42_RS20090	0.49	+1.1
4,341,835	+		RR42_RS20090	0.49	-0.2
4,341,835	+		RR42_RS20090	0.49	+0.2
4,341,835	+		RR42_RS20090	0.49	+0.5
4,341,835	+		RR42_RS20090	0.49	-0.7
4,341,835	+		RR42_RS20090	0.49	+0.1
4,341,952	+		RR42_RS20090	0.65	+0.3
4,341,952	+		RR42_RS20090	0.65	-1.5