Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20050

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20045 and RR42_RS20050 are separated by 66 nucleotidesRR42_RS20050 and RR42_RS20055 are separated by 104 nucleotides RR42_RS20045: RR42_RS20045 - hypothetical protein, at 4,330,393 to 4,331,025 _RS20045 RR42_RS20050: RR42_RS20050 - hypothetical protein, at 4,331,092 to 4,331,493 _RS20050 RR42_RS20055: RR42_RS20055 - ATP-dependent DNA helicase Rep, at 4,331,598 to 4,333,703 _RS20055 Position (kb) 4331 4332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4330.094 kb on + strandat 4330.094 kb on + strandat 4330.095 kb on + strandat 4330.152 kb on + strandat 4330.152 kb on + strandat 4330.153 kb on - strandat 4330.183 kb on + strandat 4330.183 kb on + strandat 4330.183 kb on + strandat 4330.183 kb on + strandat 4330.183 kb on + strandat 4330.183 kb on + strandat 4330.184 kb on - strandat 4330.240 kb on + strandat 4330.240 kb on + strandat 4330.240 kb on + strandat 4330.240 kb on + strandat 4330.240 kb on + strandat 4330.240 kb on + strandat 4330.240 kb on + strandat 4330.241 kb on - strandat 4330.241 kb on - strandat 4330.241 kb on - strandat 4330.241 kb on - strandat 4330.243 kb on + strandat 4330.243 kb on + strandat 4330.243 kb on + strandat 4330.243 kb on + strandat 4330.244 kb on - strandat 4330.244 kb on - strandat 4330.244 kb on - strandat 4330.244 kb on - strandat 4330.244 kb on - strandat 4330.321 kb on + strandat 4330.321 kb on + strandat 4330.342 kb on + strandat 4330.342 kb on + strandat 4330.342 kb on + strandat 4330.342 kb on + strandat 4330.343 kb on - strandat 4330.343 kb on - strandat 4330.343 kb on - strandat 4330.654 kb on - strand, within RR42_RS20045at 4330.782 kb on + strand, within RR42_RS20045at 4330.782 kb on + strand, within RR42_RS20045at 4330.783 kb on - strand, within RR42_RS20045at 4330.783 kb on - strand, within RR42_RS20045at 4331.024 kb on - strandat 4331.050 kb on - strandat 4331.088 kb on + strandat 4331.088 kb on + strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.089 kb on - strandat 4331.153 kb on - strand, within RR42_RS20050at 4331.172 kb on + strand, within RR42_RS20050at 4331.207 kb on + strand, within RR42_RS20050at 4331.208 kb on - strand, within RR42_RS20050at 4331.208 kb on - strand, within RR42_RS20050at 4331.472 kb on - strandat 4331.472 kb on - strandat 4331.498 kb on - strandat 4331.532 kb on + strandat 4331.532 kb on + strandat 4331.533 kb on - strandat 4331.533 kb on - strandat 4331.533 kb on - strandat 4331.533 kb on - strandat 4331.537 kb on + strandat 4331.537 kb on + strandat 4331.538 kb on - strandat 4331.542 kb on + strandat 4331.543 kb on - strandat 4331.543 kb on - strandat 4331.553 kb on + strandat 4331.752 kb on + strandat 4331.752 kb on + strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.753 kb on - strandat 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.823 kb on + strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.824 kb on - strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.827 kb on + strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4331.828 kb on - strand, within RR42_RS20055at 4332.202 kb on + strand, within RR42_RS20055at 4332.202 kb on + strand, within RR42_RS20055at 4332.202 kb on + strand, within RR42_RS20055at 4332.203 kb on - strand, within RR42_RS20055at 4332.208 kb on + strand, within RR42_RS20055at 4332.208 kb on + strand, within RR42_RS20055at 4332.217 kb on + strand, within RR42_RS20055at 4332.217 kb on + strand, within RR42_RS20055at 4332.218 kb on - strand, within RR42_RS20055

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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4,330,094 + +0.9
4,330,094 + -2.2
4,330,095 + +0.9
4,330,152 + +0.4
4,330,152 + -0.3
4,330,153 - +0.9
4,330,183 + -0.1
4,330,183 + +0.1
4,330,183 + +0.5
4,330,183 + +1.1
4,330,183 + +1.4
4,330,183 + -0.5
4,330,184 - -1.0
4,330,240 + -0.1
4,330,240 + +0.2
4,330,240 + -2.2
4,330,240 + +0.2
4,330,240 + -1.6
4,330,240 + +0.4
4,330,240 + -0.5
4,330,241 - -0.4
4,330,241 - +1.5
4,330,241 - +1.5
4,330,241 - -0.6
4,330,243 + -0.8
4,330,243 + -2.1
4,330,243 + -1.8
4,330,243 + -0.5
4,330,244 - +0.7
4,330,244 - -0.1
4,330,244 - +0.3
4,330,244 - +0.2
4,330,244 - -0.7
4,330,321 + -1.1
4,330,321 + -0.9
4,330,342 + +0.2
4,330,342 + +1.5
4,330,342 + -0.3
4,330,342 + -1.1
4,330,343 - +1.5
4,330,343 - +0.4
4,330,343 - +0.0
4,330,654 - RR42_RS20045 0.41 -0.3
4,330,782 + RR42_RS20045 0.61 -0.5
4,330,782 + RR42_RS20045 0.61 -0.0
4,330,783 - RR42_RS20045 0.62 +0.1
4,330,783 - RR42_RS20045 0.62 +0.8
4,331,024 - -1.3
4,331,050 - -0.5
4,331,088 + -0.2
4,331,088 + +1.8
4,331,089 - -2.4
4,331,089 - +1.1
4,331,089 - -2.3
4,331,089 - -0.5
4,331,153 - RR42_RS20050 0.15 +2.1
4,331,172 + RR42_RS20050 0.20 +0.1
4,331,207 + RR42_RS20050 0.29 +0.7
4,331,208 - RR42_RS20050 0.29 -0.2
4,331,208 - RR42_RS20050 0.29 +1.5
4,331,472 - -0.1
4,331,472 - -0.7
4,331,498 - +0.4
4,331,532 + +0.5
4,331,532 + -3.3
4,331,533 - -1.0
4,331,533 - +0.8
4,331,533 - +0.1
4,331,533 - -0.9
4,331,537 + -1.3
4,331,537 + +0.3
4,331,538 - -2.4
4,331,542 + +0.2
4,331,543 - +0.2
4,331,543 - +0.2
4,331,553 + +0.4
4,331,752 + -0.6
4,331,752 + -0.1
4,331,753 - -1.8
4,331,753 - +1.5
4,331,753 - -0.6
4,331,753 - -0.5
4,331,753 - +2.4
4,331,753 - -0.1
4,331,823 + RR42_RS20055 0.11 +0.3
4,331,823 + RR42_RS20055 0.11 -0.2
4,331,823 + RR42_RS20055 0.11 +2.5
4,331,823 + RR42_RS20055 0.11 +0.6
4,331,823 + RR42_RS20055 0.11 -0.0
4,331,823 + RR42_RS20055 0.11 +0.5
4,331,823 + RR42_RS20055 0.11 +1.7
4,331,823 + RR42_RS20055 0.11 -1.1
4,331,824 - RR42_RS20055 0.11 +3.1
4,331,824 - RR42_RS20055 0.11 -2.9
4,331,824 - RR42_RS20055 0.11 -0.1
4,331,824 - RR42_RS20055 0.11 -1.7
4,331,824 - RR42_RS20055 0.11 +0.9
4,331,827 + RR42_RS20055 0.11 -2.2
4,331,827 + RR42_RS20055 0.11 -0.5
4,331,827 + RR42_RS20055 0.11 +0.5
4,331,827 + RR42_RS20055 0.11 -0.5
4,331,827 + RR42_RS20055 0.11 +0.8
4,331,827 + RR42_RS20055 0.11 -0.5
4,331,827 + RR42_RS20055 0.11 +0.5
4,331,827 + RR42_RS20055 0.11 +0.3
4,331,827 + RR42_RS20055 0.11 +0.1
4,331,827 + RR42_RS20055 0.11 +0.4
4,331,827 + RR42_RS20055 0.11 +0.7
4,331,827 + RR42_RS20055 0.11 -1.1
4,331,827 + RR42_RS20055 0.11 +1.3
4,331,827 + RR42_RS20055 0.11 +0.5
4,331,827 + RR42_RS20055 0.11 +1.0
4,331,828 - RR42_RS20055 0.11 +0.6
4,331,828 - RR42_RS20055 0.11 -0.0
4,331,828 - RR42_RS20055 0.11 +0.5
4,331,828 - RR42_RS20055 0.11 -2.2
4,331,828 - RR42_RS20055 0.11 -2.9
4,331,828 - RR42_RS20055 0.11 -0.5
4,331,828 - RR42_RS20055 0.11 +0.6
4,331,828 - RR42_RS20055 0.11 +0.8
4,331,828 - RR42_RS20055 0.11 +0.9
4,331,828 - RR42_RS20055 0.11 +0.8
4,331,828 - RR42_RS20055 0.11 +1.8
4,331,828 - RR42_RS20055 0.11 +1.0
4,331,828 - RR42_RS20055 0.11 -0.8
4,331,828 - RR42_RS20055 0.11 -0.6
4,331,828 - RR42_RS20055 0.11 +0.6
4,331,828 - RR42_RS20055 0.11 +1.5
4,332,202 + RR42_RS20055 0.29 -1.7
4,332,202 + RR42_RS20055 0.29 +1.1
4,332,202 + RR42_RS20055 0.29 -1.1
4,332,203 - RR42_RS20055 0.29 +0.0
4,332,208 + RR42_RS20055 0.29 +1.1
4,332,208 + RR42_RS20055 0.29 +1.1
4,332,217 + RR42_RS20055 0.29 +0.2
4,332,217 + RR42_RS20055 0.29 +0.5
4,332,218 - RR42_RS20055 0.29 +2.2

Or see this region's nucleotide sequence