Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18805 and RR42_RS18810 are separated by 63 nucleotides RR42_RS18810 and RR42_RS18815 are separated by 258 nucleotides RR42_RS18815 and RR42_RS18820 are separated by 37 nucleotides
RR42_RS18805: RR42_RS18805 - peptidase, at 4,078,632 to 4,079,129
_RS18805
RR42_RS18810: RR42_RS18810 - stringent starvation protein A, at 4,079,193 to 4,079,804
_RS18810
RR42_RS18815: RR42_RS18815 - cytochrome C, at 4,080,063 to 4,080,806
_RS18815
RR42_RS18820: RR42_RS18820 - cytochrome B, at 4,080,844 to 4,082,247
_RS18820
Position (kb)
4080
4081 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4079.086 kb on + strand at 4079.086 kb on + strand at 4079.087 kb on - strand at 4079.087 kb on - strand at 4079.104 kb on + strand at 4079.105 kb on - strand at 4079.865 kb on - strand at 4079.899 kb on + strand at 4079.919 kb on + strand at 4079.920 kb on - strand at 4079.943 kb on - strand at 4079.943 kb on - strand at 4080.065 kb on - strand at 4080.082 kb on + strand at 4080.223 kb on + strand, within RR42_RS18815 at 4080.419 kb on + strand, within RR42_RS18815 at 4080.419 kb on + strand, within RR42_RS18815 at 4080.428 kb on - strand, within RR42_RS18815 at 4080.616 kb on + strand, within RR42_RS18815 at 4080.652 kb on + strand, within RR42_RS18815 at 4080.833 kb on + strand at 4080.834 kb on - strand at 4080.933 kb on - strand at 4080.985 kb on + strand, within RR42_RS18820 at 4081.314 kb on - strand, within RR42_RS18820 at 4081.314 kb on - strand, within RR42_RS18820 at 4081.484 kb on + strand, within RR42_RS18820 at 4081.484 kb on + strand, within RR42_RS18820 at 4081.487 kb on + strand, within RR42_RS18820 at 4081.683 kb on - strand, within RR42_RS18820 at 4081.794 kb on - strand, within RR42_RS18820
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 4,079,086 + +1.4 4,079,086 + +1.4 4,079,087 - +1.5 4,079,087 - +1.2 4,079,104 + +3.3 4,079,105 - +0.9 4,079,865 - +0.9 4,079,899 + -0.9 4,079,919 + -0.9 4,079,920 - +1.3 4,079,943 - -0.4 4,079,943 - -0.9 4,080,065 - +1.1 4,080,082 + +1.5 4,080,223 + RR42_RS18815 0.22 +3.1 4,080,419 + RR42_RS18815 0.48 +1.4 4,080,419 + RR42_RS18815 0.48 +2.2 4,080,428 - RR42_RS18815 0.49 +2.6 4,080,616 + RR42_RS18815 0.74 +2.4 4,080,652 + RR42_RS18815 0.79 +2.6 4,080,833 + +2.6 4,080,834 - +0.7 4,080,933 - +2.3 4,080,985 + RR42_RS18820 0.10 +2.8 4,081,314 - RR42_RS18820 0.33 +1.7 4,081,314 - RR42_RS18820 0.33 +2.8 4,081,484 + RR42_RS18820 0.46 +3.4 4,081,484 + RR42_RS18820 0.46 +2.4 4,081,487 + RR42_RS18820 0.46 +2.5 4,081,683 - RR42_RS18820 0.60 +2.3 4,081,794 - RR42_RS18820 0.68 +3.3
Or see this region's nucleotide sequence