Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17925

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17915 and RR42_RS17920 overlap by 4 nucleotidesRR42_RS17920 and RR42_RS17925 are separated by 23 nucleotidesRR42_RS17925 and RR42_RS17930 are separated by 185 nucleotidesRR42_RS17930 and RR42_RS17935 overlap by 8 nucleotides RR42_RS17915: RR42_RS17915 - proline dioxygenase, at 3,876,751 to 3,877,701 _RS17915 RR42_RS17920: RR42_RS17920 - lytic transglycosylase, at 3,877,698 to 3,878,444 _RS17920 RR42_RS17925: RR42_RS17925 - prolyl-tRNA synthetase, at 3,878,468 to 3,880,189 _RS17925 RR42_RS17930: RR42_RS17930 - RNA pyrophosphohydrolase, at 3,880,375 to 3,881,037 _RS17930 RR42_RS17935: RR42_RS17935 - lipoprotein, at 3,881,030 to 3,881,659 _RS17935 Position (kb) 3878 3879 3880 3881Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3877.655 kb on + strandat 3877.865 kb on - strand, within RR42_RS17920at 3877.891 kb on + strand, within RR42_RS17920at 3877.892 kb on - strand, within RR42_RS17920at 3877.936 kb on + strand, within RR42_RS17920at 3877.936 kb on + strand, within RR42_RS17920at 3877.936 kb on + strand, within RR42_RS17920at 3877.936 kb on + strand, within RR42_RS17920at 3877.937 kb on - strand, within RR42_RS17920at 3877.937 kb on - strand, within RR42_RS17920at 3877.960 kb on + strand, within RR42_RS17920at 3878.034 kb on + strand, within RR42_RS17920at 3878.034 kb on + strand, within RR42_RS17920at 3878.034 kb on + strand, within RR42_RS17920at 3878.035 kb on - strand, within RR42_RS17920at 3878.035 kb on - strand, within RR42_RS17920at 3878.035 kb on - strand, within RR42_RS17920at 3878.035 kb on - strand, within RR42_RS17920at 3878.035 kb on - strand, within RR42_RS17920at 3878.075 kb on - strand, within RR42_RS17920at 3878.075 kb on - strand, within RR42_RS17920at 3878.075 kb on - strand, within RR42_RS17920at 3878.149 kb on + strandat 3878.149 kb on + strand, within RR42_RS17920at 3878.149 kb on + strand, within RR42_RS17920at 3878.149 kb on + strand, within RR42_RS17920at 3878.150 kb on - strand, within RR42_RS17920at 3878.150 kb on - strand, within RR42_RS17920at 3878.150 kb on - strand, within RR42_RS17920at 3878.152 kb on + strand, within RR42_RS17920at 3878.152 kb on + strand, within RR42_RS17920at 3878.239 kb on + strand, within RR42_RS17920at 3880.338 kb on - strandat 3880.338 kb on - strandat 3880.338 kb on - strandat 3880.535 kb on + strand, within RR42_RS17930at 3880.536 kb on - strand, within RR42_RS17930at 3880.536 kb on - strand, within RR42_RS17930at 3880.536 kb on - strand, within RR42_RS17930at 3880.649 kb on - strand, within RR42_RS17930at 3880.759 kb on + strand, within RR42_RS17930at 3880.759 kb on + strand, within RR42_RS17930at 3880.805 kb on - strand, within RR42_RS17930at 3880.848 kb on + strand, within RR42_RS17930at 3880.909 kb on + strand, within RR42_RS17930at 3881.037 kb on - strandat 3881.171 kb on + strand, within RR42_RS17935at 3881.172 kb on - strand, within RR42_RS17935

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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3,877,655 + -0.1
3,877,865 - RR42_RS17920 0.22 -0.1
3,877,891 + RR42_RS17920 0.26 -1.2
3,877,892 - RR42_RS17920 0.26 -0.0
3,877,936 + RR42_RS17920 0.32 -0.5
3,877,936 + RR42_RS17920 0.32 -1.2
3,877,936 + RR42_RS17920 0.32 +1.9
3,877,936 + RR42_RS17920 0.32 -1.1
3,877,937 - RR42_RS17920 0.32 +0.4
3,877,937 - RR42_RS17920 0.32 +0.3
3,877,960 + RR42_RS17920 0.35 -1.3
3,878,034 + RR42_RS17920 0.45 -1.4
3,878,034 + RR42_RS17920 0.45 +0.2
3,878,034 + RR42_RS17920 0.45 +1.1
3,878,035 - RR42_RS17920 0.45 +0.9
3,878,035 - RR42_RS17920 0.45 +0.7
3,878,035 - RR42_RS17920 0.45 -0.1
3,878,035 - RR42_RS17920 0.45 -1.7
3,878,035 - RR42_RS17920 0.45 +0.1
3,878,075 - RR42_RS17920 0.50 -2.1
3,878,075 - RR42_RS17920 0.50 -0.0
3,878,075 - RR42_RS17920 0.50 -1.0
3,878,149 + +1.4
3,878,149 + RR42_RS17920 0.60 +1.4
3,878,149 + RR42_RS17920 0.60 -0.4
3,878,149 + RR42_RS17920 0.60 +0.4
3,878,150 - RR42_RS17920 0.61 +1.0
3,878,150 - RR42_RS17920 0.61 -0.8
3,878,150 - RR42_RS17920 0.61 +0.6
3,878,152 + RR42_RS17920 0.61 +0.6
3,878,152 + RR42_RS17920 0.61 +1.7
3,878,239 + RR42_RS17920 0.72 +0.4
3,880,338 - +0.6
3,880,338 - -0.3
3,880,338 - +1.6
3,880,535 + RR42_RS17930 0.24 +2.9
3,880,536 - RR42_RS17930 0.24 +2.5
3,880,536 - RR42_RS17930 0.24 +3.3
3,880,536 - RR42_RS17930 0.24 +2.8
3,880,649 - RR42_RS17930 0.41 +2.1
3,880,759 + RR42_RS17930 0.58 +3.4
3,880,759 + RR42_RS17930 0.58 +3.0
3,880,805 - RR42_RS17930 0.65 +2.8
3,880,848 + RR42_RS17930 0.71 +2.2
3,880,909 + RR42_RS17930 0.81 +1.4
3,881,037 - +0.8
3,881,171 + RR42_RS17935 0.22 +3.0
3,881,172 - RR42_RS17935 0.23 +0.1

Or see this region's nucleotide sequence