Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17780

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,845,535	-				+0.3
3,845,535	-				-0.0
3,845,562	-				-0.0
3,845,562	-				+0.9
3,845,618	+				-0.7
3,845,621	+				+0.3
3,845,621	+				+0.6
3,845,621	+				-1.6
3,845,622	-				+0.5
3,845,696	+				+0.7
3,845,696	+				+0.4
3,845,697	-				+0.2
3,845,701	+				-3.6
3,845,701	+				-1.6
3,845,702	-				-0.6
3,845,702	-				+1.0
3,845,705	+				+0.4
3,845,705	+				+1.5
3,845,705	+				-0.6
3,845,706	-				-1.8
3,845,706	-				-0.6
3,845,706	-				+0.6
3,845,706	-				-0.5
3,845,716	-				+1.4
3,845,815	+				-2.2
3,845,816	-				-0.9
3,846,057	+		RR42_RS17775	0.38	-1.6
3,846,058	-		RR42_RS17775	0.39	-0.2
3,846,058	-		RR42_RS17775	0.39	-0.6
3,846,210	+		RR42_RS17775	0.61	+0.6
3,846,211	-		RR42_RS17775	0.61	+1.0
3,846,211	-		RR42_RS17775	0.61	+0.9
3,846,211	-		RR42_RS17775	0.61	-0.3
3,846,211	-		RR42_RS17775	0.61	+1.6
3,846,256	-		RR42_RS17775	0.67	-2.4
3,846,256	-		RR42_RS17775	0.67	+0.5
3,846,256	-		RR42_RS17775	0.67	+2.0
3,846,444	+				+2.1
3,846,444	+				-1.0
3,846,444	+				+0.1
3,846,444	+				+1.6
3,846,444	+				-0.9
3,846,445	-				+0.4
3,846,806	+		RR42_RS17780	0.34	+0.0
3,847,023	+		RR42_RS17780	0.58	-0.2
3,847,023	+		RR42_RS17780	0.58	-1.4
3,847,024	-		RR42_RS17780	0.58	+1.2
3,847,024	-		RR42_RS17780	0.58	-1.0
3,847,040	-		RR42_RS17780	0.60	+0.2
3,847,096	+		RR42_RS17780	0.66	+1.4
3,847,096	+		RR42_RS17780	0.66	+0.7
3,847,097	-		RR42_RS17780	0.66	+1.2
3,847,371	+				+2.8
3,847,372	-				-0.6
3,847,438	-				-0.9
3,847,443	-				+0.6
3,847,477	-				+0.1
3,847,477	-				-0.2
3,847,477	-				+0.5
3,847,477	-				+0.5
3,847,477	-				-3.3
3,847,641	-		RR42_RS17785	0.23	-0.6
3,847,681	+		RR42_RS17785	0.34	+0.8
3,847,682	-		RR42_RS17785	0.34	+1.5
3,847,682	-		RR42_RS17785	0.34	-2.0
3,847,682	-		RR42_RS17785	0.34	-2.0
3,847,682	-		RR42_RS17785	0.34	-0.1
3,847,682	-		RR42_RS17785	0.34	+0.6
3,847,801	+		RR42_RS17785	0.64	-1.8
3,847,847	+		RR42_RS17785	0.76	-2.4
3,847,847	+		RR42_RS17785	0.76	+0.4
3,847,847	+		RR42_RS17785	0.76	-3.0
3,847,847	+		RR42_RS17785	0.76	+0.8
3,847,848	-		RR42_RS17785	0.76	-1.5
3,847,848	-		RR42_RS17785	0.76	+0.9
3,847,848	-		RR42_RS17785	0.76	-0.3
3,847,861	+		RR42_RS17785	0.79	+0.6
3,847,861	+		RR42_RS17785	0.79	+0.8
3,847,861	+		RR42_RS17785	0.79	+1.9
3,847,862	-		RR42_RS17785	0.80	+0.6
3,847,862	-		RR42_RS17785	0.80	-0.1
3,847,862	-		RR42_RS17785	0.80	+0.8
3,847,862	-		RR42_RS17785	0.80	-1.6
3,847,862	-		RR42_RS17785	0.80	+0.6
3,847,862	-		RR42_RS17785	0.80	-0.5
3,847,895	-		RR42_RS17785	0.88	-0.4
3,847,895	-		RR42_RS17785	0.88	+1.4
3,847,895	-		RR42_RS17785	0.88	+0.4
3,847,895	-		RR42_RS17785	0.88	-0.2
3,847,895	-		RR42_RS17785	0.88	+0.0
3,847,900	+		RR42_RS17785	0.89	-0.1
3,847,901	-		RR42_RS17785	0.90	-0.2
3,847,921	+				+0.9
3,847,922	-				-0.2
3,847,950	+				-3.2
3,848,270	-		RR42_RS17790	0.13	-2.4
3,848,309	+		RR42_RS17790	0.16	+0.3
3,848,310	-		RR42_RS17790	0.16	-0.3
3,848,310	-		RR42_RS17790	0.16	-1.0
3,848,310	-		RR42_RS17790	0.16	+2.6
3,848,360	-		RR42_RS17790	0.20	+0.1
3,848,360	-		RR42_RS17790	0.20	-0.3
3,848,361	+		RR42_RS17790	0.20	-1.6
3,848,361	+		RR42_RS17790	0.20	+0.7
3,848,361	+		RR42_RS17790	0.20	-3.2
3,848,362	-		RR42_RS17790	0.20	-0.2
3,848,362	-		RR42_RS17790	0.20	-1.7
3,848,363	+		RR42_RS17790	0.20	-1.0
3,848,363	+		RR42_RS17790	0.20	+1.1
3,848,363	+		RR42_RS17790	0.20	-2.0
3,848,363	+		RR42_RS17790	0.20	-0.5
3,848,363	+		RR42_RS17790	0.20	+1.0
3,848,364	-		RR42_RS17790	0.20	-1.8
3,848,364	-		RR42_RS17790	0.20	-2.5
3,848,364	-		RR42_RS17790	0.20	+0.4
3,848,364	-		RR42_RS17790	0.20	+2.7
3,848,364	-		RR42_RS17790	0.20	+0.0