Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17430

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,772,503	+		RR42_RS17425	0.34	-1.1
3,772,504	-		RR42_RS17425	0.34	-0.7
3,772,534	+		RR42_RS17425	0.37	+0.5
3,772,534	+		RR42_RS17425	0.37	-1.2
3,772,534	+		RR42_RS17425	0.37	-0.4
3,772,535	-		RR42_RS17425	0.37	+0.8
3,772,660	+		RR42_RS17425	0.48	+1.3
3,772,660	+		RR42_RS17425	0.48	+0.7
3,772,661	-		RR42_RS17425	0.48	-1.2
3,772,723	+		RR42_RS17425	0.54	-0.4
3,772,723	+		RR42_RS17425	0.54	-3.5
3,772,723	+		RR42_RS17425	0.54	-0.1
3,772,723	+		RR42_RS17425	0.54	+0.5
3,772,724	-		RR42_RS17425	0.54	-2.7
3,772,724	-		RR42_RS17425	0.54	+0.0
3,772,943	+		RR42_RS17425	0.73	-1.4
3,772,999	-		RR42_RS17425	0.78	+0.1
3,772,999	-		RR42_RS17425	0.78	+0.4
3,772,999	-		RR42_RS17425	0.78	-1.6
3,773,152	+				+0.3
3,773,152	+				-1.5
3,773,152	+				-0.2
3,773,153	-				+1.0
3,773,153	-				-1.0
3,773,179	+				-1.7
3,773,179	+				+0.0
3,773,180	-				-0.3
3,773,180	-				+0.3
3,773,209	+				+0.0
3,773,209	+				-0.4
3,773,209	+				+0.7
3,773,210	-				-0.5
3,773,219	+				-1.1
3,773,345	-				+2.2
3,773,348	+				+0.2
3,773,348	+				+0.9
3,773,349	-				+0.3
3,773,499	+		RR42_RS17430	0.18	-0.1
3,773,499	+		RR42_RS17430	0.18	-1.7
3,773,500	-		RR42_RS17430	0.18	+0.9
3,773,500	-		RR42_RS17430	0.18	+0.9
3,774,059	+		RR42_RS17430	0.60	-3.0
3,774,059	+		RR42_RS17430	0.60	+0.3
3,774,060	-		RR42_RS17430	0.61	-0.8
3,774,060	-		RR42_RS17430	0.61	-0.7
3,774,060	-		RR42_RS17430	0.61	+0.3
3,774,063	+		RR42_RS17430	0.61	+0.0
3,774,063	+		RR42_RS17430	0.61	-1.0
3,774,063	+		RR42_RS17430	0.61	-2.2
3,774,063	+		RR42_RS17430	0.61	+0.3
3,774,063	+		RR42_RS17430	0.61	+0.2
3,774,063	+		RR42_RS17430	0.61	-2.5
3,774,063	+		RR42_RS17430	0.61	-0.4
3,774,063	+		RR42_RS17430	0.61	-0.2
3,774,063	+		RR42_RS17430	0.61	+0.7
3,774,063	+		RR42_RS17430	0.61	-2.4
3,774,063	+		RR42_RS17430	0.61	-0.1
3,774,063	+		RR42_RS17430	0.61	+0.2
3,774,063	+		RR42_RS17430	0.61	+0.4
3,774,063	+		RR42_RS17430	0.61	-2.0
3,774,064	-		RR42_RS17430	0.61	+0.8
3,774,064	-		RR42_RS17430	0.61	+0.0
3,774,064	-		RR42_RS17430	0.61	+3.0
3,774,064	-		RR42_RS17430	0.61	-1.1
3,774,064	-		RR42_RS17430	0.61	+0.2
3,774,064	-		RR42_RS17430	0.61	-1.1
3,774,065	+		RR42_RS17430	0.61	-0.1
3,774,065	+		RR42_RS17430	0.61	-2.1
3,774,065	+		RR42_RS17430	0.61	-0.4
3,774,065	+		RR42_RS17430	0.61	+0.4
3,774,065	+		RR42_RS17430	0.61	-3.1
3,774,065	+		RR42_RS17430	0.61	-1.0
3,774,066	-		RR42_RS17430	0.61	+0.4
3,774,066	-		RR42_RS17430	0.61	-1.4
3,774,066	-		RR42_RS17430	0.61	-1.9
3,774,066	-		RR42_RS17430	0.61	-2.5
3,774,066	-		RR42_RS17430	0.61	-0.8
3,774,066	-		RR42_RS17430	0.61	-0.4
3,774,067	+		RR42_RS17430	0.61	-0.9
3,774,067	+		RR42_RS17430	0.61	-1.8
3,774,067	+		RR42_RS17430	0.61	-1.7
3,774,067	+		RR42_RS17430	0.61	-2.8
3,774,067	+		RR42_RS17430	0.61	+0.4
3,774,067	+		RR42_RS17430	0.61	-1.2
3,774,067	+		RR42_RS17430	0.61	-0.7
3,774,068	-		RR42_RS17430	0.61	-1.5
3,774,068	-		RR42_RS17430	0.61	+0.6
3,774,068	-		RR42_RS17430	0.61	+0.8
3,774,068	-		RR42_RS17430	0.61	+0.3
3,774,068	-		RR42_RS17430	0.61	-1.1
3,774,068	-		RR42_RS17430	0.61	-1.8
3,774,068	-		RR42_RS17430	0.61	-0.8
3,774,068	-		RR42_RS17430	0.61	-1.6
3,774,068	-		RR42_RS17430	0.61	+0.9
3,774,068	-		RR42_RS17430	0.61	-1.3
3,774,068	-		RR42_RS17430	0.61	+1.1
3,774,068	-		RR42_RS17430	0.61	+0.9
3,774,114	+		RR42_RS17430	0.65	+0.5
3,774,114	+		RR42_RS17430	0.65	-1.1
3,774,167	+		RR42_RS17430	0.69	-0.7
3,774,167	+		RR42_RS17430	0.69	-0.7
3,774,168	-		RR42_RS17430	0.69	-1.1
3,774,176	+		RR42_RS17430	0.69	-1.1
3,774,176	+		RR42_RS17430	0.69	-2.2
3,774,176	+		RR42_RS17430	0.69	-1.5
3,774,176	+		RR42_RS17430	0.69	-1.4
3,774,177	-		RR42_RS17430	0.69	-2.4
3,774,263	+		RR42_RS17430	0.76	-1.3
3,774,264	-		RR42_RS17430	0.76	-0.7
3,774,264	-		RR42_RS17430	0.76	-2.1
3,774,264	-		RR42_RS17430	0.76	-0.4
3,774,267	-		RR42_RS17430	0.76	-2.1
3,774,288	+		RR42_RS17430	0.78	-0.9
3,774,378	-		RR42_RS17430	0.84	+0.3
3,774,378	-		RR42_RS17430	0.84	-0.7
3,774,378	-		RR42_RS17430	0.84	-3.5
3,774,378	-		RR42_RS17430	0.84	+0.1
3,774,378	-		RR42_RS17430	0.84	-2.6
3,774,464	+				+0.1
3,774,465	-				-1.4
3,774,465	-				+0.1
3,774,504	+				-1.4
3,774,505	-				-4.2
3,774,506	+				-1.1
3,774,506	+				+0.9
3,774,507	-				-2.2
3,774,507	-				-3.1
3,774,507	-				-1.9
3,774,507	-				-2.2
3,774,507	-				-1.7
3,774,657	+				-1.8
3,774,657	+				-2.5
3,774,657	+				-1.7
3,774,657	+				-1.2
3,774,658	-				+0.2
3,774,658	-				-0.7
3,774,658	-				+0.0
3,774,658	-				-3.7
3,774,658	-				-1.2
3,774,694	+				-0.6
3,774,695	-				+0.9
3,774,695	-				-2.5
3,774,695	-				-1.4
3,774,695	-				-0.1
3,774,717	+				-0.4
3,774,718	-				+0.0
3,774,726	+				+1.2
3,774,785	+		RR42_RS17435	0.13	+0.3
3,774,825	+		RR42_RS17435	0.16	+0.0
3,774,825	+		RR42_RS17435	0.16	-0.3
3,774,862	-		RR42_RS17435	0.18	+0.5
3,774,862	-		RR42_RS17435	0.18	-0.0
3,774,862	-		RR42_RS17435	0.18	-1.2
3,774,882	+		RR42_RS17435	0.20	+0.8
3,774,882	+		RR42_RS17435	0.20	-2.2
3,774,883	-		RR42_RS17435	0.20	-2.4
3,775,023	+		RR42_RS17435	0.30	-0.0
3,775,024	-		RR42_RS17435	0.30	-0.4
3,775,024	-		RR42_RS17435	0.30	+0.9
3,775,024	-		RR42_RS17435	0.30	+0.1
3,775,067	+		RR42_RS17435	0.33	+0.2
3,775,067	+		RR42_RS17435	0.33	-0.3
3,775,067	+		RR42_RS17435	0.33	+0.4
3,775,068	-		RR42_RS17435	0.33	+0.4
3,775,068	-		RR42_RS17435	0.33	+0.4
3,775,068	-		RR42_RS17435	0.33	-2.2
3,775,252	+		RR42_RS17435	0.46	+0.7
3,775,252	+		RR42_RS17435	0.46	-0.3
3,775,253	-		RR42_RS17435	0.46	-0.3
3,775,269	+		RR42_RS17435	0.47	+0.3
3,775,320	+		RR42_RS17435	0.51	+0.1
3,775,321	-		RR42_RS17435	0.51	+0.5
3,775,321	-		RR42_RS17435	0.51	+2.8
3,775,407	+		RR42_RS17435	0.57	-1.0
3,775,408	-		RR42_RS17435	0.57	+0.9
3,775,473	+		RR42_RS17435	0.62	+0.9
3,775,473	+		RR42_RS17435	0.62	+1.9
3,775,474	-		RR42_RS17435	0.62	+0.1
3,775,512	+		RR42_RS17435	0.65	-1.1
3,775,512	+		RR42_RS17435	0.65	-0.4
3,775,513	-		RR42_RS17435	0.65	+0.6