Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17135

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,710,693	+		RR42_RS17125	0.82	-0.6
3,710,694	-		RR42_RS17125	0.82	+1.0
3,710,694	-		RR42_RS17125	0.82	-0.3
3,710,723	+		RR42_RS17125	0.86	+0.1
3,710,751	-				-0.8
3,710,751	-				+0.3
3,710,751	-				-2.3
3,710,886	-				+0.1
3,711,009	+				-0.8
3,711,009	+				+1.2
3,711,010	-				-1.3
3,711,010	-				+0.4
3,711,201	+		RR42_RS17130	0.44	-1.7
3,711,201	+		RR42_RS17130	0.44	+0.0
3,711,202	-		RR42_RS17130	0.44	-1.3
3,711,202	-		RR42_RS17130	0.44	-1.0
3,711,202	-		RR42_RS17130	0.44	+0.7
3,711,202	-		RR42_RS17130	0.44	+0.0
3,711,204	+		RR42_RS17130	0.45	+1.0
3,711,204	+		RR42_RS17130	0.45	+0.5
3,711,205	-		RR42_RS17130	0.45	-1.5
3,711,205	-		RR42_RS17130	0.45	+0.7
3,711,205	-		RR42_RS17130	0.45	-0.5
3,711,205	-		RR42_RS17130	0.45	+0.2
3,711,260	+		RR42_RS17130	0.61	+1.2
3,711,260	+		RR42_RS17130	0.61	-1.2
3,711,283	+		RR42_RS17130	0.68	+1.3
3,711,284	-		RR42_RS17130	0.68	+0.2
3,711,284	-		RR42_RS17130	0.68	+0.6
3,711,284	-		RR42_RS17130	0.68	+0.2
3,711,309	+		RR42_RS17130	0.76	+1.4
3,711,434	+				-0.5
3,711,434	+				-0.7
3,711,434	+				-0.3
3,711,434	+				-0.8
3,711,434	+				+1.2
3,711,434	+				+0.6
3,711,434	+				-1.5
3,711,434	+				+0.1
3,711,434	+				+0.1
3,711,434	+				+0.7
3,711,434	+				-0.1
3,711,434	+				+0.0
3,711,434	+				+0.4
3,711,434	+				+2.8
3,711,434	+				-1.1
3,711,434	+				+0.3
3,711,435	-				-1.0
3,711,435	-				+0.9
3,711,435	-				+2.1
3,711,435	-				-1.7
3,711,435	-				-0.4
3,711,435	-				-0.7
3,711,435	-				-1.8
3,711,435	-				-0.2
3,711,459	-				-0.1
3,711,459	-				-1.3
3,711,459	-				+0.1
3,711,477	-				-3.4
3,711,542	-				+1.4
3,711,565	+				+0.7
3,711,565	+				-0.3
3,711,566	-				-0.8
3,711,584	+				-1.3
3,711,585	-				-3.5
3,711,587	+				+0.7
3,711,587	+				+1.4
3,711,588	-				-3.1
3,711,588	-				-0.3
3,711,597	+				+1.8
3,711,675	+				-0.4
3,711,675	+				+1.7
3,711,675	+				-0.0
3,711,675	+				+0.4
3,711,675	+				+1.0
3,711,676	-				+0.2
3,711,679	+				-0.4
3,711,679	+				-2.8
3,711,679	+				+0.1
3,711,679	+				+0.3
3,711,679	+				+0.3
3,711,679	+				-1.8
3,711,679	+				+0.2
3,711,680	-				-0.7
3,711,680	-				-0.3
3,711,680	-				-1.1
3,711,680	-				-0.3
3,711,680	-				-2.4
3,711,680	-				-1.7
3,711,753	+				+0.3
3,711,753	+				+0.0
3,711,753	+				+0.0
3,711,753	+				+2.5
3,711,753	+				-0.8
3,711,753	+				+0.2
3,711,753	+				-0.2
3,711,754	-				-0.1
3,711,754	-				-1.5
3,711,754	-				-1.1
3,711,754	-				+0.3
3,711,876	+		RR42_RS17135	0.16	+0.3
3,711,876	+		RR42_RS17135	0.16	+1.0
3,711,876	+		RR42_RS17135	0.16	+0.7
3,711,877	-		RR42_RS17135	0.16	+1.6
3,711,877	-		RR42_RS17135	0.16	-1.5
3,711,877	-		RR42_RS17135	0.16	-3.5
3,711,877	-		RR42_RS17135	0.16	+2.2
3,711,877	-		RR42_RS17135	0.16	+0.7
3,711,877	-		RR42_RS17135	0.16	+1.3
3,711,891	+		RR42_RS17135	0.17	+0.1
3,711,891	+		RR42_RS17135	0.17	-2.4
3,711,891	+		RR42_RS17135	0.17	+0.9
3,711,892	-		RR42_RS17135	0.17	+1.3
3,712,000	+		RR42_RS17135	0.26	+0.7
3,712,000	+		RR42_RS17135	0.26	+0.5
3,712,001	-		RR42_RS17135	0.26	-2.0
3,712,002	+		RR42_RS17135	0.26	-1.5
3,712,002	+		RR42_RS17135	0.26	-0.9
3,712,002	+		RR42_RS17135	0.26	+0.3
3,712,003	-		RR42_RS17135	0.26	-1.2
3,712,003	-		RR42_RS17135	0.26	-1.5
3,712,003	-		RR42_RS17135	0.26	+0.7
3,712,039	-		RR42_RS17135	0.29	-2.1
3,712,188	+		RR42_RS17135	0.41	+0.6
3,712,188	+		RR42_RS17135	0.41	-0.5
3,712,188	+		RR42_RS17135	0.41	+2.0
3,712,189	-		RR42_RS17135	0.41	-1.7
3,712,349	-		RR42_RS17135	0.54	-0.5
3,712,446	+		RR42_RS17135	0.62	-2.8
3,712,446	+		RR42_RS17135	0.62	-2.6
3,712,446	+		RR42_RS17135	0.62	+0.1
3,712,446	+		RR42_RS17135	0.62	+0.2
3,712,447	-		RR42_RS17135	0.62	-0.7
3,712,447	-		RR42_RS17135	0.62	+1.0
3,712,447	-		RR42_RS17135	0.62	+0.4
3,712,527	+		RR42_RS17135	0.68	+0.2
3,712,528	-		RR42_RS17135	0.68	+3.2
3,712,551	+		RR42_RS17135	0.70	-0.1
3,712,551	+		RR42_RS17135	0.70	+0.2
3,712,552	-		RR42_RS17135	0.70	-1.0
3,712,552	-		RR42_RS17135	0.70	+1.0
3,712,552	-		RR42_RS17135	0.70	+1.3
3,712,552	-		RR42_RS17135	0.70	-1.5
3,712,552	-		RR42_RS17135	0.70	+0.8
3,712,641	+		RR42_RS17135	0.77	-0.8
3,712,642	-		RR42_RS17135	0.77	-0.7
3,712,692	+		RR42_RS17135	0.81	+0.3
3,712,692	+		RR42_RS17135	0.81	-0.1
3,712,692	+		RR42_RS17135	0.81	+1.1
3,712,692	+		RR42_RS17135	0.81	+0.8
3,712,692	+		RR42_RS17135	0.81	-0.6
3,712,692	+		RR42_RS17135	0.81	+0.5
3,712,692	+		RR42_RS17135	0.81	-2.3
3,712,719	+		RR42_RS17135	0.84	+1.4
3,712,719	+		RR42_RS17135	0.84	-0.1
3,712,719	+		RR42_RS17135	0.84	-1.8
3,712,719	+		RR42_RS17135	0.84	+1.2
3,712,719	+		RR42_RS17135	0.84	+1.3
3,712,720	-		RR42_RS17135	0.84	+0.3
3,712,720	-		RR42_RS17135	0.84	+0.5
3,712,720	-		RR42_RS17135	0.84	+0.2
3,712,720	-		RR42_RS17135	0.84	+1.2
3,712,755	+		RR42_RS17135	0.86	-1.3
3,712,756	-		RR42_RS17135	0.86	+0.8
3,712,804	+				+0.1
3,712,805	-				-0.4
3,712,920	+				-1.6
3,712,920	+				-0.5
3,712,920	+				+0.3
3,712,920	+				+0.6
3,712,920	+				+1.5
3,712,920	+				+0.5
3,712,920	+				+0.6
3,712,921	-				-0.3
3,712,921	-				+0.4
3,712,921	-				+1.1
3,712,921	-				-1.4
3,712,921	-				+0.2
3,713,010	+				+0.0
3,713,011	-				+0.3
3,713,067	-				-1.3
3,713,093	-				-0.6
3,713,115	-				+0.6
3,713,117	+				-0.2
3,713,117	+				-0.7
3,713,117	+				-0.5
3,713,118	-				-0.3
3,713,183	+				-2.0
3,713,184	-				-0.5
3,713,196	+				-0.1
3,713,196	+				+0.3
3,713,196	+				-3.7
3,713,238	+				-0.7
3,713,238	+				+0.7
3,713,238	+				-0.4
3,713,239	-				+0.5
3,713,239	-				-2.3
3,713,239	-				-0.3
3,713,349	-		RR42_RS17140	0.15	-0.3
3,713,456	+		RR42_RS17140	0.31	-2.3
3,713,456	+		RR42_RS17140	0.31	-0.2
3,713,456	+		RR42_RS17140	0.31	-0.7
3,713,457	-		RR42_RS17140	0.31	-2.8
3,713,457	-		RR42_RS17140	0.31	+0.3
3,713,457	-		RR42_RS17140	0.31	-0.7
3,713,457	-		RR42_RS17140	0.31	-1.3
3,713,457	-		RR42_RS17140	0.31	+1.3