Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16655

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16645 and RR42_RS16650 are separated by 54 nucleotidesRR42_RS16650 and RR42_RS16655 are separated by 105 nucleotidesRR42_RS16655 and RR42_RS16660 are separated by 63 nucleotides RR42_RS16645: RR42_RS16645 - n-acetyl-gamma-glutamyl-phosphate reductase, at 3,607,613 to 3,608,542 _RS16645 RR42_RS16650: RR42_RS16650 - hypothetical protein, at 3,608,597 to 3,609,100 _RS16650 RR42_RS16655: RR42_RS16655 - glutamine cyclotransferase, at 3,609,206 to 3,609,892 _RS16655 RR42_RS16660: RR42_RS16660 - DNA-binding protein, at 3,609,956 to 3,611,176 _RS16660 Position (kb) 3609 3610Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3608.298 kb on + strand, within RR42_RS16645at 3608.340 kb on + strand, within RR42_RS16645at 3608.340 kb on + strand, within RR42_RS16645at 3608.341 kb on - strand, within RR42_RS16645at 3608.341 kb on - strand, within RR42_RS16645at 3608.341 kb on - strand, within RR42_RS16645at 3608.540 kb on + strandat 3608.548 kb on - strandat 3608.548 kb on - strandat 3609.816 kb on + strand, within RR42_RS16655at 3609.816 kb on + strand, within RR42_RS16655at 3609.816 kb on + strand, within RR42_RS16655at 3609.817 kb on - strand, within RR42_RS16655at 3609.817 kb on - strand, within RR42_RS16655at 3609.817 kb on - strand, within RR42_RS16655at 3609.817 kb on - strand, within RR42_RS16655at 3609.817 kb on - strand, within RR42_RS16655at 3609.858 kb on + strandat 3609.858 kb on + strandat 3609.983 kb on + strandat 3609.984 kb on - strandat 3609.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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3,608,298 + RR42_RS16645 0.74 +0.9
3,608,340 + RR42_RS16645 0.78 -2.3
3,608,340 + RR42_RS16645 0.78 -0.4
3,608,341 - RR42_RS16645 0.78 +1.6
3,608,341 - RR42_RS16645 0.78 -1.0
3,608,341 - RR42_RS16645 0.78 -1.4
3,608,540 + -1.6
3,608,548 - +0.3
3,608,548 - +0.0
3,609,816 + RR42_RS16655 0.89 -1.7
3,609,816 + RR42_RS16655 0.89 -3.1
3,609,816 + RR42_RS16655 0.89 -0.1
3,609,817 - RR42_RS16655 0.89 -0.4
3,609,817 - RR42_RS16655 0.89 -1.1
3,609,817 - RR42_RS16655 0.89 +1.8
3,609,817 - RR42_RS16655 0.89 -0.3
3,609,817 - RR42_RS16655 0.89 -0.7
3,609,858 + -3.1
3,609,858 + +0.3
3,609,983 + +0.9
3,609,984 - -1.0
3,609,984 - +0.1

Or see this region's nucleotide sequence