Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16050

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16040 and RR42_RS16045 are separated by 267 nucleotidesRR42_RS16045 and RR42_RS16050 are separated by 46 nucleotidesRR42_RS16050 and RR42_RS16055 are separated by 138 nucleotides RR42_RS16040: RR42_RS16040 - membrane protein, at 3,474,414 to 3,476,270 _RS16040 RR42_RS16045: RR42_RS16045 - hypothetical protein, at 3,476,538 to 3,476,726 _RS16045 RR42_RS16050: RR42_RS16050 - segregation and condensation protein A, at 3,476,773 to 3,477,654 _RS16050 RR42_RS16055: RR42_RS16055 - pantothenate synthetase, at 3,477,793 to 3,478,641 _RS16055 Position (kb) 3476 3477 3478Strain fitness (log2 ratio) -2 -1 0 1 2at 3475.987 kb on + strand, within RR42_RS16040at 3475.987 kb on + strand, within RR42_RS16040at 3476.039 kb on + strand, within RR42_RS16040at 3476.039 kb on + strand, within RR42_RS16040at 3476.040 kb on - strand, within RR42_RS16040at 3476.040 kb on - strand, within RR42_RS16040at 3476.040 kb on - strand, within RR42_RS16040at 3476.041 kb on + strand, within RR42_RS16040at 3476.041 kb on + strand, within RR42_RS16040at 3476.041 kb on + strand, within RR42_RS16040at 3476.041 kb on + strand, within RR42_RS16040at 3476.041 kb on + strand, within RR42_RS16040at 3476.041 kb on + strand, within RR42_RS16040at 3476.041 kb on + strand, within RR42_RS16040at 3476.041 kb on + strand, within RR42_RS16040at 3476.042 kb on - strand, within RR42_RS16040at 3476.042 kb on - strand, within RR42_RS16040at 3476.042 kb on - strand, within RR42_RS16040at 3476.175 kb on + strandat 3476.497 kb on + strandat 3476.770 kb on + strandat 3477.640 kb on + strandat 3477.641 kb on - strandat 3477.694 kb on + strandat 3477.694 kb on + strandat 3477.694 kb on + strandat 3477.695 kb on - strandat 3477.721 kb on + strandat 3477.721 kb on + strandat 3477.769 kb on + strandat 3477.769 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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3,475,987 + RR42_RS16040 0.85 -2.1
3,475,987 + RR42_RS16040 0.85 -1.1
3,476,039 + RR42_RS16040 0.88 +0.7
3,476,039 + RR42_RS16040 0.88 -1.0
3,476,040 - RR42_RS16040 0.88 -0.2
3,476,040 - RR42_RS16040 0.88 +0.5
3,476,040 - RR42_RS16040 0.88 -2.3
3,476,041 + RR42_RS16040 0.88 +1.0
3,476,041 + RR42_RS16040 0.88 +1.6
3,476,041 + RR42_RS16040 0.88 +0.4
3,476,041 + RR42_RS16040 0.88 +0.7
3,476,041 + RR42_RS16040 0.88 -0.6
3,476,041 + RR42_RS16040 0.88 +0.2
3,476,041 + RR42_RS16040 0.88 -0.8
3,476,041 + RR42_RS16040 0.88 +2.2
3,476,042 - RR42_RS16040 0.88 -2.2
3,476,042 - RR42_RS16040 0.88 -0.1
3,476,042 - RR42_RS16040 0.88 -0.2
3,476,175 + +0.1
3,476,497 + +0.9
3,476,770 + +0.3
3,477,640 + +1.1
3,477,641 - -1.0
3,477,694 + +0.8
3,477,694 + -0.5
3,477,694 + -0.3
3,477,695 - +0.2
3,477,721 + +0.1
3,477,721 + -2.3
3,477,769 + -0.3
3,477,769 + -0.4

Or see this region's nucleotide sequence