Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15790 and RR42_RS15795 are separated by 5 nucleotides RR42_RS15795 and RR42_RS15800 overlap by 4 nucleotides RR42_RS15800 and RR42_RS15805 overlap by 4 nucleotides
RR42_RS15790: RR42_RS15790 - aminotransferase class III, at 3,412,692 to 3,413,981
_RS15790
RR42_RS15795: RR42_RS15795 - spore coat protein, at 3,413,987 to 3,414,757
_RS15795
RR42_RS15800: RR42_RS15800 - aldo/keto reductase, at 3,414,754 to 3,415,650
_RS15800
RR42_RS15805: RR42_RS15805 - spore coat protein, at 3,415,647 to 3,416,795
_RS15805
Position (kb)
3413
3414
3415 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3413.456 kb on - strand, within RR42_RS15790 at 3413.456 kb on - strand, within RR42_RS15790 at 3413.525 kb on - strand, within RR42_RS15790 at 3413.817 kb on - strand, within RR42_RS15790 at 3413.817 kb on - strand, within RR42_RS15790 at 3413.817 kb on - strand, within RR42_RS15790 at 3413.841 kb on - strand, within RR42_RS15790 at 3413.864 kb on - strand at 3413.864 kb on - strand at 3414.003 kb on - strand at 3414.005 kb on + strand at 3414.018 kb on - strand at 3414.018 kb on - strand at 3414.364 kb on - strand, within RR42_RS15795 at 3414.364 kb on - strand, within RR42_RS15795 at 3414.368 kb on - strand, within RR42_RS15795 at 3414.368 kb on - strand, within RR42_RS15795 at 3414.368 kb on - strand, within RR42_RS15795 at 3414.368 kb on - strand, within RR42_RS15795 at 3414.511 kb on - strand, within RR42_RS15795 at 3414.511 kb on - strand, within RR42_RS15795 at 3414.567 kb on - strand, within RR42_RS15795 at 3414.657 kb on - strand, within RR42_RS15795 at 3414.699 kb on - strand at 3414.817 kb on - strand at 3414.884 kb on - strand, within RR42_RS15800 at 3414.902 kb on - strand, within RR42_RS15800 at 3415.148 kb on - strand, within RR42_RS15800 at 3415.506 kb on - strand, within RR42_RS15800 at 3415.560 kb on + strand, within RR42_RS15800
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 3,413,456 - RR42_RS15790 0.59 +3.5 3,413,456 - RR42_RS15790 0.59 +2.7 3,413,525 - RR42_RS15790 0.65 +3.4 3,413,817 - RR42_RS15790 0.87 +1.8 3,413,817 - RR42_RS15790 0.87 +1.8 3,413,817 - RR42_RS15790 0.87 +2.9 3,413,841 - RR42_RS15790 0.89 +2.0 3,413,864 - +2.9 3,413,864 - +3.1 3,414,003 - -1.8 3,414,005 + +2.8 3,414,018 - -0.1 3,414,018 - -0.5 3,414,364 - RR42_RS15795 0.49 +1.7 3,414,364 - RR42_RS15795 0.49 +2.8 3,414,368 - RR42_RS15795 0.49 +3.0 3,414,368 - RR42_RS15795 0.49 +2.6 3,414,368 - RR42_RS15795 0.49 +1.9 3,414,368 - RR42_RS15795 0.49 +2.8 3,414,511 - RR42_RS15795 0.68 +2.1 3,414,511 - RR42_RS15795 0.68 +3.1 3,414,567 - RR42_RS15795 0.75 +2.0 3,414,657 - RR42_RS15795 0.87 +1.7 3,414,699 - +2.6 3,414,817 - +3.1 3,414,884 - RR42_RS15800 0.14 +3.0 3,414,902 - RR42_RS15800 0.16 +2.8 3,415,148 - RR42_RS15800 0.44 +2.7 3,415,506 - RR42_RS15800 0.84 +2.6 3,415,560 + RR42_RS15800 0.90 -2.4
Or see this region's nucleotide sequence