Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15200 and RR42_RS15205 are separated by 123 nucleotides RR42_RS15205 and RR42_RS15210 are separated by 4 nucleotides RR42_RS15210 and RR42_RS15215 are separated by 53 nucleotides
RR42_RS15200: RR42_RS15200 - phenazine biosynthesis protein PhzC/PhzF, at 3,292,974 to 3,293,834
_RS15200
RR42_RS15205: RR42_RS15205 - pyridoxamine 5'-phosphate oxidase, at 3,293,958 to 3,294,578
_RS15205
RR42_RS15210: RR42_RS15210 - negative transcriptional regulator, at 3,294,583 to 3,295,200
_RS15210
RR42_RS15215: RR42_RS15215 - carnitine dehydratase, at 3,295,254 to 3,296,693
_RS15215
Position (kb)
3294
3295
3296 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3293.874 kb on - strand at 3294.048 kb on + strand, within RR42_RS15205 at 3294.049 kb on - strand, within RR42_RS15205 at 3294.063 kb on + strand, within RR42_RS15205 at 3294.064 kb on - strand, within RR42_RS15205 at 3294.120 kb on + strand, within RR42_RS15205 at 3294.573 kb on + strand at 3294.573 kb on + strand at 3294.573 kb on + strand at 3294.574 kb on - strand at 3294.574 kb on - strand at 3294.574 kb on - strand at 3294.586 kb on + strand at 3294.586 kb on + strand at 3294.586 kb on + strand at 3294.586 kb on + strand at 3294.586 kb on + strand at 3294.586 kb on + strand at 3294.586 kb on + strand at 3294.586 kb on + strand at 3294.587 kb on - strand at 3294.587 kb on - strand at 3294.587 kb on - strand at 3294.587 kb on - strand at 3294.587 kb on - strand at 3294.753 kb on + strand, within RR42_RS15210 at 3294.754 kb on - strand, within RR42_RS15210 at 3294.832 kb on + strand, within RR42_RS15210 at 3294.832 kb on + strand, within RR42_RS15210 at 3294.832 kb on + strand, within RR42_RS15210 at 3294.833 kb on - strand, within RR42_RS15210 at 3294.851 kb on - strand, within RR42_RS15210 at 3294.883 kb on + strand, within RR42_RS15210 at 3294.883 kb on + strand, within RR42_RS15210 at 3294.884 kb on - strand, within RR42_RS15210 at 3294.901 kb on + strand, within RR42_RS15210 at 3294.901 kb on + strand, within RR42_RS15210 at 3294.901 kb on + strand, within RR42_RS15210 at 3294.901 kb on + strand, within RR42_RS15210 at 3295.727 kb on - strand, within RR42_RS15215 at 3295.727 kb on - strand, within RR42_RS15215 at 3295.727 kb on - strand, within RR42_RS15215 at 3295.799 kb on - strand, within RR42_RS15215
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 3,293,874 - +0.3 3,294,048 + RR42_RS15205 0.14 +0.2 3,294,049 - RR42_RS15205 0.15 -3.1 3,294,063 + RR42_RS15205 0.17 -0.1 3,294,064 - RR42_RS15205 0.17 +1.2 3,294,120 + RR42_RS15205 0.26 -1.1 3,294,573 + -1.8 3,294,573 + +0.0 3,294,573 + -0.8 3,294,574 - -0.1 3,294,574 - +0.8 3,294,574 - -1.7 3,294,586 + -0.7 3,294,586 + +0.4 3,294,586 + -1.1 3,294,586 + -1.8 3,294,586 + -2.8 3,294,586 + -1.4 3,294,586 + +0.7 3,294,586 + +0.5 3,294,587 - -0.6 3,294,587 - -1.4 3,294,587 - -1.0 3,294,587 - -0.2 3,294,587 - -1.6 3,294,753 + RR42_RS15210 0.28 +1.2 3,294,754 - RR42_RS15210 0.28 +0.1 3,294,832 + RR42_RS15210 0.40 +0.0 3,294,832 + RR42_RS15210 0.40 +1.0 3,294,832 + RR42_RS15210 0.40 -0.3 3,294,833 - RR42_RS15210 0.40 +0.8 3,294,851 - RR42_RS15210 0.43 -3.0 3,294,883 + RR42_RS15210 0.49 -0.8 3,294,883 + RR42_RS15210 0.49 -1.7 3,294,884 - RR42_RS15210 0.49 -0.0 3,294,901 + RR42_RS15210 0.51 -1.4 3,294,901 + RR42_RS15210 0.51 +0.5 3,294,901 + RR42_RS15210 0.51 +0.4 3,294,901 + RR42_RS15210 0.51 +0.6 3,295,727 - RR42_RS15215 0.33 -0.2 3,295,727 - RR42_RS15215 0.33 -0.7 3,295,727 - RR42_RS15215 0.33 -0.2 3,295,799 - RR42_RS15215 0.38 -0.8
Or see this region's nucleotide sequence