Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14975

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14965 and RR42_RS14975 are separated by 486 nucleotidesRR42_RS14975 and RR42_RS14980 are separated by 225 nucleotidesRR42_RS14980 and RR42_RS14985 are separated by 130 nucleotides RR42_RS14965: RR42_RS14965 - hypothetical protein, at 3,234,764 to 3,237,040 _RS14965 RR42_RS14975: RR42_RS14975 - DNA primase, at 3,237,527 to 3,239,341 _RS14975 RR42_RS14980: RR42_RS14980 - glutamyl-tRNA amidotransferase, at 3,239,567 to 3,240,016 _RS14980 RR42_RS14985: RR42_RS14985 - 30S ribosomal protein S21, at 3,240,147 to 3,240,359 _RS14985 Position (kb) 3237 3238 3239 3240Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3237.023 kb on - strandat 3237.026 kb on - strandat 3237.026 kb on - strandat 3237.026 kb on - strandat 3237.071 kb on - strandat 3237.071 kb on - strandat 3237.071 kb on - strandat 3237.071 kb on - strandat 3237.377 kb on + strandat 3237.377 kb on + strandat 3237.377 kb on + strandat 3237.378 kb on - strandat 3237.378 kb on - strandat 3237.383 kb on + strandat 3237.383 kb on + strandat 3237.384 kb on - strandat 3237.384 kb on - strandat 3237.437 kb on + strandat 3237.437 kb on + strandat 3237.469 kb on + strandat 3237.469 kb on + strandat 3237.470 kb on - strandat 3237.470 kb on - strandat 3237.470 kb on - strandat 3237.497 kb on + strandat 3239.357 kb on - strandat 3239.440 kb on - strandat 3239.446 kb on - strandat 3239.446 kb on - strandat 3239.453 kb on - strandat 3239.513 kb on + strandat 3239.551 kb on + strandat 3239.660 kb on - strand, within RR42_RS14980at 3239.751 kb on + strand, within RR42_RS14980at 3239.751 kb on + strand, within RR42_RS14980at 3239.751 kb on + strand, within RR42_RS14980at 3239.752 kb on - strand, within RR42_RS14980at 3240.022 kb on + strandat 3240.152 kb on - strandat 3240.152 kb on - strandat 3240.191 kb on - strand, within RR42_RS14985

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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3,237,023 - +2.9
3,237,026 - -1.4
3,237,026 - +1.4
3,237,026 - +0.5
3,237,071 - -0.9
3,237,071 - -0.2
3,237,071 - +0.4
3,237,071 - +0.6
3,237,377 + -2.1
3,237,377 + -3.1
3,237,377 + -3.2
3,237,378 - +0.3
3,237,378 - +0.3
3,237,383 + -2.2
3,237,383 + -0.3
3,237,384 - -0.8
3,237,384 - +1.2
3,237,437 + -3.2
3,237,437 + -3.8
3,237,469 + -2.9
3,237,469 + -2.2
3,237,470 - +2.4
3,237,470 - +0.6
3,237,470 - +0.6
3,237,497 + +0.5
3,239,357 - +0.9
3,239,440 - +1.0
3,239,446 - +0.5
3,239,446 - -2.5
3,239,453 - +1.5
3,239,513 + -0.0
3,239,551 + -0.2
3,239,660 - RR42_RS14980 0.21 -0.2
3,239,751 + RR42_RS14980 0.41 +0.2
3,239,751 + RR42_RS14980 0.41 +0.3
3,239,751 + RR42_RS14980 0.41 +1.0
3,239,752 - RR42_RS14980 0.41 +0.5
3,240,022 + -0.3
3,240,152 - -2.2
3,240,152 - -1.0
3,240,191 - RR42_RS14985 0.21 -1.9

Or see this region's nucleotide sequence