Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13885

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,992,104	+		RR42_RS13880	0.78	-3.0
2,992,104	+		RR42_RS13880	0.78	-2.0
2,992,104	+		RR42_RS13880	0.78	-0.8
2,992,105	-		RR42_RS13880	0.78	+0.2
2,992,105	-		RR42_RS13880	0.78	+1.4
2,992,105	-		RR42_RS13880	0.78	-0.4
2,992,105	-		RR42_RS13880	0.78	-1.8
2,992,105	-		RR42_RS13880	0.78	-1.0
2,992,105	-		RR42_RS13880	0.78	+0.6
2,992,188	+		RR42_RS13880	0.83	-1.6
2,992,188	+		RR42_RS13880	0.83	-0.3
2,992,188	+		RR42_RS13880	0.83	+1.9
2,992,189	-		RR42_RS13880	0.83	-0.1
2,992,235	+		RR42_RS13880	0.85	-2.2
2,992,235	+		RR42_RS13880	0.85	-2.3
2,992,236	-		RR42_RS13880	0.85	-0.8
2,992,236	-		RR42_RS13880	0.85	-0.6
2,992,280	-		RR42_RS13880	0.87	+1.6
2,992,317	+		RR42_RS13880	0.89	-1.4
2,992,318	-		RR42_RS13880	0.89	+0.8
2,992,551	-				-0.1
2,992,552	+				-0.7
2,992,552	+				-0.8
2,992,552	+				-0.8
2,992,552	+				-1.8
2,992,552	+				+0.6
2,992,553	-				+1.3
2,992,553	-				+3.5
2,992,592	-				+0.3
2,992,595	+				+0.9
2,992,596	-				-0.8
2,992,596	-				-0.8
2,992,714	+				-1.6
2,992,723	+				-1.0
2,992,723	+				+0.1
2,992,723	+				-1.8
2,992,723	+				-0.8
2,992,723	+				+0.2
2,992,724	-				+1.2
2,992,724	-				+0.6
2,992,724	-				+1.9
2,992,724	-				-0.9
2,992,724	-				+1.9
2,992,726	-				+1.3
2,992,726	-				+0.9
2,992,726	-				-0.8
2,992,741	-				-1.6
2,992,825	-				-1.4
2,993,024	+				+1.2
2,993,024	+				-0.8
2,993,024	+				+1.6
2,993,025	-				-1.4
2,993,025	-				+1.0
2,993,196	+		RR42_RS13885	0.27	-1.2
2,993,254	-		RR42_RS13885	0.33	+0.6
2,993,254	-		RR42_RS13885	0.33	-1.2
2,993,300	-		RR42_RS13885	0.38	+1.8
2,993,457	-		RR42_RS13885	0.54	+0.9
2,993,513	+		RR42_RS13885	0.60	-1.6
2,993,514	-		RR42_RS13885	0.60	+0.1
2,993,515	+		RR42_RS13885	0.61	-1.1
2,993,515	+		RR42_RS13885	0.61	+1.0
2,993,515	+		RR42_RS13885	0.61	-2.6
2,993,516	-		RR42_RS13885	0.61	-0.1
2,993,597	-		RR42_RS13885	0.69	-0.5
2,993,601	+		RR42_RS13885	0.70	-1.8
2,993,601	+		RR42_RS13885	0.70	-0.3
2,993,601	+		RR42_RS13885	0.70	+1.0
2,993,601	+		RR42_RS13885	0.70	-1.6
2,993,602	-		RR42_RS13885	0.70	-1.3
2,993,602	-		RR42_RS13885	0.70	+0.5
2,993,602	-		RR42_RS13885	0.70	-2.0
2,993,622	-		RR42_RS13885	0.72	-1.1
2,993,622	-		RR42_RS13885	0.72	-0.7
2,993,736	-		RR42_RS13885	0.84	-0.4
2,993,914	+				+1.3
2,994,178	+		RR42_RS13890	0.13	+1.0
2,994,256	+		RR42_RS13890	0.19	+0.1
2,994,257	-		RR42_RS13890	0.19	+0.2
2,994,502	+		RR42_RS13890	0.39	-0.7
2,994,503	-		RR42_RS13890	0.39	+1.8