Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13445

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,900,672	-		RR42_RS13440	0.45	-0.0
2,900,941	+		RR42_RS13440	0.65	+1.5
2,900,941	+		RR42_RS13440	0.65	-1.7
2,900,941	+		RR42_RS13440	0.65	-0.4
2,900,942	-		RR42_RS13440	0.66	-0.6
2,900,942	-		RR42_RS13440	0.66	-0.2
2,901,105	-		RR42_RS13440	0.78	-2.3
2,901,113	+		RR42_RS13440	0.78	-0.1
2,901,114	-		RR42_RS13440	0.78	-0.7
2,901,114	-		RR42_RS13440	0.78	-1.1
2,901,114	-		RR42_RS13440	0.78	+0.5
2,901,176	-		RR42_RS13440	0.83	+0.0
2,901,178	+		RR42_RS13440	0.83	+1.1
2,901,178	+		RR42_RS13440	0.83	+1.2
2,901,179	-		RR42_RS13440	0.83	-0.4
2,901,179	-		RR42_RS13440	0.83	-0.2
2,901,179	-		RR42_RS13440	0.83	+0.0
2,901,221	-		RR42_RS13440	0.86	-0.0
2,901,262	+		RR42_RS13440	0.89	+0.3
2,901,263	-		RR42_RS13440	0.89	+1.9
2,901,268	+		RR42_RS13440	0.90	-1.7
2,901,269	-		RR42_RS13440	0.90	-0.0
2,901,269	-		RR42_RS13440	0.90	-1.2
2,901,271	+				-1.2
2,901,337	+				+0.4
2,901,337	+				+1.2
2,901,337	+				+1.0
2,901,337	+				+0.1
2,901,338	-				+0.1
2,901,338	-				-0.6
2,901,480	+				+0.6
2,901,480	+				-0.7
2,901,481	-				+1.0
2,901,586	-				+0.2
2,901,586	-				+0.7
2,901,622	+		RR42_RS13445	0.14	-0.3
2,901,622	+		RR42_RS13445	0.14	+0.5
2,901,622	+		RR42_RS13445	0.14	+0.1
2,901,622	+		RR42_RS13445	0.14	-1.1
2,901,622	+		RR42_RS13445	0.14	+1.0
2,901,623	-		RR42_RS13445	0.14	-1.3
2,901,623	-		RR42_RS13445	0.14	+0.5
2,901,849	-		RR42_RS13445	0.46	-0.4
2,901,925	-		RR42_RS13445	0.57	+0.5
2,901,925	-		RR42_RS13445	0.57	-0.3
2,901,925	-		RR42_RS13445	0.57	-0.0
2,901,925	-		RR42_RS13445	0.57	-0.7
2,902,131	+		RR42_RS13445	0.86	-2.3
2,902,254	-				+1.0
2,902,254	-				-0.0
2,902,319	+				+0.7
2,902,319	+				-0.1
2,902,319	+				+0.2
2,902,320	-				+0.2
2,902,320	-				+1.1
2,902,428	+		RR42_RS13450	0.25	+2.0
2,902,428	+		RR42_RS13450	0.25	+0.4
2,902,428	+		RR42_RS13450	0.25	-1.5
2,902,428	+		RR42_RS13450	0.25	+1.9
2,902,429	-		RR42_RS13450	0.25	+0.6
2,902,429	-		RR42_RS13450	0.25	-0.7
2,902,430	+		RR42_RS13450	0.25	-0.5
2,902,430	+		RR42_RS13450	0.25	+0.3
2,902,430	+		RR42_RS13450	0.25	+1.5
2,902,430	+		RR42_RS13450	0.25	+0.9
2,902,431	-		RR42_RS13450	0.25	+0.4
2,902,431	-		RR42_RS13450	0.25	+0.2
2,902,431	-		RR42_RS13450	0.25	-0.3
2,902,431	-		RR42_RS13450	0.25	+0.9
2,902,431	-		RR42_RS13450	0.25	+1.3
2,902,431	-		RR42_RS13450	0.25	+1.4
2,902,976	+				-1.4
2,902,982	+				+3.9
2,902,983	-				+1.8
2,902,987	+				+0.1
2,902,988	-				+1.9
2,903,034	+				+0.2
2,903,034	+				-0.3
2,903,034	+				-0.7
2,903,109	+		RR42_RS13455	0.12	+0.6
2,903,109	+		RR42_RS13455	0.12	-1.2
2,903,109	+		RR42_RS13455	0.12	+0.1
2,903,114	-		RR42_RS13455	0.13	+3.3
2,903,115	+		RR42_RS13455	0.13	-1.2
2,903,115	+		RR42_RS13455	0.13	-0.3
2,903,178	+		RR42_RS13455	0.21	-2.2