Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13255

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13250 and RR42_RS13255 are separated by 221 nucleotidesRR42_RS13255 and RR42_RS13260 overlap by 4 nucleotides RR42_RS13250: RR42_RS13250 - LacI family transcriptional regulator, at 2,853,548 to 2,854,498 _RS13250 RR42_RS13255: RR42_RS13255 - hydroxymethylglutaryl-CoA lyase, at 2,854,720 to 2,855,688 _RS13255 RR42_RS13260: RR42_RS13260 - CoA-transferase, at 2,855,685 to 2,856,881 _RS13260 Position (kb) 2854 2855 2856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2853.757 kb on - strand, within RR42_RS13250at 2853.757 kb on - strand, within RR42_RS13250at 2853.757 kb on - strand, within RR42_RS13250at 2853.968 kb on + strand, within RR42_RS13250at 2853.970 kb on - strand, within RR42_RS13250at 2853.970 kb on - strand, within RR42_RS13250at 2853.970 kb on - strand, within RR42_RS13250at 2853.970 kb on - strand, within RR42_RS13250at 2854.056 kb on + strand, within RR42_RS13250at 2854.087 kb on - strand, within RR42_RS13250at 2854.087 kb on - strand, within RR42_RS13250at 2854.258 kb on - strand, within RR42_RS13250at 2854.328 kb on + strand, within RR42_RS13250at 2854.328 kb on + strand, within RR42_RS13250at 2854.328 kb on + strand, within RR42_RS13250at 2854.328 kb on + strand, within RR42_RS13250at 2854.899 kb on + strand, within RR42_RS13255at 2854.900 kb on - strand, within RR42_RS13255at 2854.900 kb on - strand, within RR42_RS13255at 2854.900 kb on - strand, within RR42_RS13255at 2854.900 kb on - strand, within RR42_RS13255at 2854.900 kb on - strand, within RR42_RS13255at 2854.900 kb on - strand, within RR42_RS13255at 2855.120 kb on + strand, within RR42_RS13255at 2855.121 kb on - strand, within RR42_RS13255at 2855.346 kb on + strand, within RR42_RS13255at 2855.347 kb on - strand, within RR42_RS13255at 2855.442 kb on - strand, within RR42_RS13255at 2855.893 kb on + strand, within RR42_RS13260at 2855.926 kb on + strand, within RR42_RS13260at 2855.927 kb on - strand, within RR42_RS13260at 2856.146 kb on - strand, within RR42_RS13260at 2856.146 kb on - strand, within RR42_RS13260at 2856.236 kb on - strand, within RR42_RS13260at 2856.278 kb on - strand, within RR42_RS13260at 2856.431 kb on - strand, within RR42_RS13260at 2856.556 kb on + strand, within RR42_RS13260at 2856.557 kb on - strand, within RR42_RS13260

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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2,853,757 - RR42_RS13250 0.22 +0.3
2,853,757 - RR42_RS13250 0.22 +0.1
2,853,757 - RR42_RS13250 0.22 -1.0
2,853,968 + RR42_RS13250 0.44 +1.6
2,853,970 - RR42_RS13250 0.44 -0.7
2,853,970 - RR42_RS13250 0.44 +0.4
2,853,970 - RR42_RS13250 0.44 +2.1
2,853,970 - RR42_RS13250 0.44 +0.8
2,854,056 + RR42_RS13250 0.53 +0.5
2,854,087 - RR42_RS13250 0.57 +0.7
2,854,087 - RR42_RS13250 0.57 +0.3
2,854,258 - RR42_RS13250 0.75 +0.6
2,854,328 + RR42_RS13250 0.82 -1.7
2,854,328 + RR42_RS13250 0.82 +0.3
2,854,328 + RR42_RS13250 0.82 +1.6
2,854,328 + RR42_RS13250 0.82 -0.3
2,854,899 + RR42_RS13255 0.18 -1.8
2,854,900 - RR42_RS13255 0.19 +0.1
2,854,900 - RR42_RS13255 0.19 +1.3
2,854,900 - RR42_RS13255 0.19 +1.1
2,854,900 - RR42_RS13255 0.19 +0.5
2,854,900 - RR42_RS13255 0.19 -0.1
2,854,900 - RR42_RS13255 0.19 +0.3
2,855,120 + RR42_RS13255 0.41 +1.0
2,855,121 - RR42_RS13255 0.41 +0.5
2,855,346 + RR42_RS13255 0.65 +0.3
2,855,347 - RR42_RS13255 0.65 -0.1
2,855,442 - RR42_RS13255 0.75 +1.1
2,855,893 + RR42_RS13260 0.17 +0.7
2,855,926 + RR42_RS13260 0.20 -1.1
2,855,927 - RR42_RS13260 0.20 +0.2
2,856,146 - RR42_RS13260 0.39 +1.8
2,856,146 - RR42_RS13260 0.39 -0.8
2,856,236 - RR42_RS13260 0.46 +3.1
2,856,278 - RR42_RS13260 0.50 -0.3
2,856,431 - RR42_RS13260 0.62 -2.7
2,856,556 + RR42_RS13260 0.73 +0.5
2,856,557 - RR42_RS13260 0.73 -3.1

Or see this region's nucleotide sequence