Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12435

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
2,669,652	-		RR42_RS12430	0.50	-1.3
2,669,652	-		RR42_RS12430	0.50	-2.5
2,670,081	+				-2.0
2,670,247	+				+0.6
2,670,305	-				+1.4
2,670,329	+				-2.6
2,670,330	-				+1.2
2,670,330	-				+0.5
2,670,351	-				-1.9
2,670,361	+				-1.1
2,670,362	-				+0.9
2,670,362	-				-0.4
2,670,395	+				-1.5
2,670,396	-				-1.2
2,670,396	-				-2.3
2,670,396	-				+0.2
2,670,624	+				+0.4
2,670,625	-				-3.0
2,670,733	-				+1.1
2,670,895	-		RR42_RS12435	0.15	+0.5
2,670,954	+		RR42_RS12435	0.17	-3.5
2,670,955	-		RR42_RS12435	0.17	-0.7
2,670,955	-		RR42_RS12435	0.17	-0.5
2,670,955	-		RR42_RS12435	0.17	-3.3
2,671,042	-		RR42_RS12435	0.20	+0.2
2,671,215	+		RR42_RS12435	0.27	-0.0
2,671,215	+		RR42_RS12435	0.27	-1.3
2,671,216	-		RR42_RS12435	0.27	+0.6
2,671,216	-		RR42_RS12435	0.27	-0.3
2,671,216	-		RR42_RS12435	0.27	-0.2
2,671,218	-		RR42_RS12435	0.27	-3.5
2,671,218	-		RR42_RS12435	0.27	+0.6
2,671,226	-		RR42_RS12435	0.27	+0.8
2,671,298	+		RR42_RS12435	0.30	+1.4
2,671,299	-		RR42_RS12435	0.30	-2.6
2,671,363	+		RR42_RS12435	0.32	-0.6
2,671,401	+		RR42_RS12435	0.33	-0.2
2,671,402	-		RR42_RS12435	0.33	-2.3
2,671,402	-		RR42_RS12435	0.33	-0.5
2,671,437	+		RR42_RS12435	0.35	+0.6
2,671,437	+		RR42_RS12435	0.35	-0.3
2,671,437	+		RR42_RS12435	0.35	+0.3
2,671,438	-		RR42_RS12435	0.35	+1.6
2,671,438	-		RR42_RS12435	0.35	+1.0
2,671,438	-		RR42_RS12435	0.35	+0.2
2,671,438	-		RR42_RS12435	0.35	-2.9
2,671,438	-		RR42_RS12435	0.35	+0.4
2,671,438	-		RR42_RS12435	0.35	+1.0
2,671,602	+		RR42_RS12435	0.41	+0.6
2,671,602	+		RR42_RS12435	0.41	+0.5
2,671,603	-		RR42_RS12435	0.41	-1.0
2,671,630	-		RR42_RS12435	0.42	+1.2
2,671,630	-		RR42_RS12435	0.42	+1.4
2,671,632	+		RR42_RS12435	0.42	+0.8
2,671,770	-		RR42_RS12435	0.47	-0.6
2,671,896	+		RR42_RS12435	0.52	-0.9
2,671,896	+		RR42_RS12435	0.52	-1.5
2,671,896	+		RR42_RS12435	0.52	+0.9
2,671,897	-		RR42_RS12435	0.52	+0.8
2,671,897	-		RR42_RS12435	0.52	-0.4
2,671,920	+		RR42_RS12435	0.52	+0.5
2,671,920	+		RR42_RS12435	0.52	-2.7
2,671,920	+		RR42_RS12435	0.52	-0.4
2,671,920	+		RR42_RS12435	0.52	+1.0
2,671,921	-		RR42_RS12435	0.52	+0.3
2,671,921	-		RR42_RS12435	0.52	-2.9
2,671,980	+		RR42_RS12435	0.55	-0.9
2,671,980	+		RR42_RS12435	0.55	-0.1
2,671,989	+		RR42_RS12435	0.55	-1.6
2,671,989	+		RR42_RS12435	0.55	+0.1
2,672,082	+		RR42_RS12435	0.58	-1.2
2,672,083	-		RR42_RS12435	0.58	-1.0
2,672,083	-		RR42_RS12435	0.58	-2.4
2,672,175	+		RR42_RS12435	0.62	-0.6
2,672,175	+		RR42_RS12435	0.62	-1.8
2,672,176	-		RR42_RS12435	0.62	+0.4
2,672,176	-		RR42_RS12435	0.62	-0.2
2,672,220	+		RR42_RS12435	0.63	-1.3
2,672,220	+		RR42_RS12435	0.63	+0.3
2,672,221	-		RR42_RS12435	0.63	+2.6
2,672,222	+		RR42_RS12435	0.63	+0.2
2,672,222	+		RR42_RS12435	0.63	+0.2
2,672,245	-		RR42_RS12435	0.64	-0.5
2,672,278	-		RR42_RS12435	0.66	-0.2
2,672,278	-		RR42_RS12435	0.66	+0.3
2,672,313	+		RR42_RS12435	0.67	-0.5
2,672,313	+		RR42_RS12435	0.67	+0.3
2,672,314	-		RR42_RS12435	0.67	-0.1
2,672,314	-		RR42_RS12435	0.67	-0.3
2,672,314	-		RR42_RS12435	0.67	-2.3
2,672,335	-		RR42_RS12435	0.68	-0.4
2,672,370	+		RR42_RS12435	0.69	+0.0
2,672,370	+		RR42_RS12435	0.69	+1.2
2,672,371	-		RR42_RS12435	0.69	+0.8
2,672,371	-		RR42_RS12435	0.69	+0.6
2,672,371	-		RR42_RS12435	0.69	-0.5
2,672,435	+		RR42_RS12435	0.71	-1.0
2,672,435	+		RR42_RS12435	0.71	+0.2
2,672,435	+		RR42_RS12435	0.71	+1.1
2,672,436	-		RR42_RS12435	0.71	+0.5
2,672,479	-		RR42_RS12435	0.73	+0.0
2,672,487	+		RR42_RS12435	0.73	-0.9
2,672,488	-		RR42_RS12435	0.73	-0.0
2,672,488	-		RR42_RS12435	0.73	+2.9
2,672,514	+		RR42_RS12435	0.74	-0.4
2,672,515	-		RR42_RS12435	0.74	+0.6
2,672,601	+		RR42_RS12435	0.77	+1.2
2,672,601	+		RR42_RS12435	0.77	+2.9
2,672,601	+		RR42_RS12435	0.77	-1.3
2,672,601	+		RR42_RS12435	0.77	-1.0
2,672,601	+		RR42_RS12435	0.77	+0.2
2,672,601	+		RR42_RS12435	0.77	+0.6
2,672,601	+		RR42_RS12435	0.77	-0.2
2,672,602	-		RR42_RS12435	0.77	-0.1
2,672,602	-		RR42_RS12435	0.77	-0.4
2,672,602	-		RR42_RS12435	0.77	-0.1
2,672,602	-		RR42_RS12435	0.77	+0.5
2,672,602	-		RR42_RS12435	0.77	-2.4
2,672,602	-		RR42_RS12435	0.77	-2.8
2,672,602	-		RR42_RS12435	0.77	-0.2
2,672,739	+		RR42_RS12435	0.82	-3.6
2,672,766	+		RR42_RS12435	0.83	+2.0
2,672,767	-		RR42_RS12435	0.83	-0.5
2,672,767	-		RR42_RS12435	0.83	-0.8
2,672,901	+		RR42_RS12435	0.88	+1.3
2,672,902	-		RR42_RS12435	0.88	+0.9
2,672,916	+		RR42_RS12435	0.89	-0.5
2,673,100	-				+0.5
2,673,632	-		RR42_RS12440	0.33	+0.0
2,673,632	-		RR42_RS12440	0.33	-0.3
2,673,632	-		RR42_RS12440	0.33	+0.3
2,673,632	-		RR42_RS12440	0.33	-0.9
2,673,632	-		RR42_RS12440	0.33	-2.2
2,673,669	+		RR42_RS12440	0.37	-0.3
2,673,821	-		RR42_RS12440	0.55	-0.5
2,674,024	+		RR42_RS12440	0.78	-0.1
2,674,024	+		RR42_RS12440	0.78	-2.4
2,674,025	-		RR42_RS12440	0.78	+0.6
2,674,164	+				-1.8
2,674,164	+				+1.3
2,674,164	+				+1.5
2,674,165	-				-1.0