Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11940

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11935 and RR42_RS11940 are separated by 142 nucleotidesRR42_RS11940 and RR42_RS11945 are separated by 50 nucleotidesRR42_RS11945 and RR42_RS11950 are separated by 99 nucleotides RR42_RS11935: RR42_RS11935 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 2,558,348 to 2,559,175 _RS11935 RR42_RS11940: RR42_RS11940 - membrane protein, at 2,559,318 to 2,559,725 _RS11940 RR42_RS11945: RR42_RS11945 - ArsC family transcriptional regulator, at 2,559,776 to 2,560,123 _RS11945 RR42_RS11950: RR42_RS11950 - succinyl-diaminopimelate desuccinylase, at 2,560,223 to 2,561,374 _RS11950 Position (kb) 2559 2560Strain fitness (log2 ratio) -2 -1 0 1at 2559.769 kb on + strandat 2559.791 kb on + strandat 2559.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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2,559,769 + -1.8
2,559,791 + -0.5
2,559,792 - +1.2

Or see this region's nucleotide sequence